RetrogeneDB ID: | retro_pabe_1360 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 16:43935563..43936100(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA2 | ||
Ensembl ID: | ENSPPYG00000013566 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
Percent Identity: | 79.67 % |
Parental protein coverage: | 60.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | YLRLHRHAYPEQRQDMPEMSQETRLQRCSRKRKAVTKRARLQKSYEMNGRAEEEETNTVEVITSAPGAML |
YLRLHRHAYPEQ.QD.PEMSQETRLQ...RK.KAVTKRARLQKS.EMN..AEE..TNT.EVITS...AML | |
Retrocopy | YLRLHRHAYPEQQQDIPEMSQETRLQPWLRKHKAVTKRARLQKSHEMNEKAEE--TNTFEVITSTQEAML |
Parental | ASWARIAARAVQPKALNSCSIRVSVEAFLMQASGVRWCVVHGRLLSADTKGWVRLQFHAGQAWVPTTHRR |
ASWARIA.RAVQPKA.NSCSI..SVEAFLM.ASGV...VVHGRL.S.DTKG.V..QFHA.QAWVPTTHRR | |
Retrocopy | ASWARIAVRAVQPKAVNSCSIPASVEAFLM*ASGVGCHVVHGRLISVDTKGCVHPQFHASQAWVPTTHRR |
Parental | MISLFLLPACIFPSPGIEDNLLCPDCAKRNKKMMKRLMTLEK |
MISL.LL.ACIFPS.GIEDN.L..DCAKRNKKMMKR.MT.EK | |
Retrocopy | MISL-LLSACIFPSLGIEDNMLRADCAKRNKKMMKR*MTMEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .03 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .20 RPM |
SRP007412_liver | 0 .12 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1113 |