Parental gene: | KRT19, ENSCJAG00000029756 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:113268134..113273903(-) |
>ENSCJAG00000029756
ATGACTTCCTACAGCTATCGCCAGTCGTCCACGTCGTCCTTCGGGGGCCTGGGCGGCGCCTCCGTGCGTTTTGGGCCGGG
TGTCGCCTTTCGCGCACCTAGCATACACGGGGGCTCCGGCGGCCGCGGCGTGTCCGTGTCCTCCACTCGCTTCGTGTCCT
CGTCCTCCTCGGGGGGCTACGGCGGCGGCTATGGCGGCATCCTGGCTACTTCCGACGGGCTGCTGGCGGGCAACGAGAAG
CTCACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCT
GGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGGGCCCGGGCCCTCCCGCGACTACAGCCACTACTACAAGACCATCC
AGGACCTGCGGGACCAGATTCTTGGTGCCACCATTGAGAACTCCAGGATTGTCCTGCAGATTGACAATGCCCGTCTGGCT
GCAGATGACTTCCGAACCAAGTTTGAGACGGAGCAGGCTTTGCGCATGAGCGTGGAGGCCGACATCAACGGCCTGCGCAG
AGTGCTGGATGAGCTGACCCTGGCCAGGACTGACCTGGAAATGCAGATTGAAGGGCTGAAGGAAGAGCTGGCCTACCTGA
AGAAGAACCATGAGGAGGAACTCAGTGTGCTGAGGGGCCAAGTGGGAGGCCAGGTTAGTGTGGAGGTGGATTCAGCTCCA
GGCACCGATCTCGCCAAGATCCTGAGTGACATGCGAAGCCAATATGAGGTCATGGCCGAGCAGAACCGGAAGGATGCTGA
AGCCTGGTTCACCAGCCGGAGTGAAGAACTGAACCGGGAGGTCGCTGTCCACAGAGAGCAGCTCCAGATGAGCAACACCG
AGGTCAGTGACCTGCGGCGCACCCTCCAGGGTCTTGAGATTGAGCTGCAGTCACAGCTGAGCATGAAAGCTGGCTTGGAA
AGCACACTGGCAGAAACGGAGGCGCGCTTTGGAGCCCAGCTGGCGGAGATCCAGGCACGGATCAGCGGTATTGAAGCCCA
GCTGGGCGATGTGCGGGCTGATAGTGAGCGGCAGAATCAGGAGTACCATCGGCTCTTGGATGTCAAGTCGCGGCTGGAGC
AGGAGATTGCCACCTACCGCAGCCTGCTGGAGGGCCAGGAAGATCGCTACAACAACCTGTCTGCCTCCAAGGTCCTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 290 .23 RPM |
| SRP051959_heart | 4 .95 RPM |
| SRP051959_kidney | 2 .37 RPM |
| SRP051959_liver | 1 .75 RPM |
| SRP051959_lung | 44 .90 RPM |
| SRP051959_lymph_node | 0 .32 RPM |
| SRP051959_skeletal_muscle | 0 .09 RPM |
| SRP051959_spleen | 1 .85 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000014086 | ortholog_one2many | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000007881 | ortholog_one2many | 6 retrogenes | |
| Homo sapiens | ENSG00000171345 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000016901 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000016158 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000018653 | ortholog_one2many | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000010787 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016132 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000024306 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000007908 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000008416 | ortholog_one2many | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000009168 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000014403 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_633 | 95.50 | 100.00 | Please wait, loading  |
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| 2. | retro_cjac_1151 | 97.99 | 100.00 | Please wait, loading |
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| 3. | retro_cjac_1812 | 82.73 | 89.47 | Please wait, loading |
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| 4. | retro_cjac_2347 | 74.94 | 97.24 | Please wait, loading |
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| 5. | retro_cjac_2646 | 93.35 | 97.74 | Please wait, loading |
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| 6. | retro_cjac_3108 | 79.35 | 60.40 | Please wait, loading |
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| 7. | retro_cjac_3198 | 63.46 | 75.69 | Please wait, loading |
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| 8. | retro_cjac_3237 | 72.34 | 58.40 | Please wait, loading |
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| 9. | retro_cjac_3358 | 97.25 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000029756 retrocopies