RetrogeneDB ID: | retro_mmul_790 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 11:9266739..9267338(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3260 | ||
Ensembl ID: | ENSMMUG00000018653 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.03 % |
Parental protein coverage: | 51.25 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | ARLAADDFRTKFETEQALRMSVEADIN-GLRRVLDELTLARTDLEMQIEGLKEELAYLKKNHEEEISVLR |
A.L.AD.FRTK.E.EQAL..S.EADI..GL.R..DELT.AR.DLE....GL.EEL..L.KNH.EEIS... | |
Retrocopy | AGLPADHFRTKSEMEQAL*RSLEADIK<GLHRAPDELTPARADLETHMQGLQEELDHLEKNHNEEISA-- |
Parental | GQVGGQVSVEVDSAPGTDLAKILSDMRSQYEVMAEQNRK-DAEAW-FTSRTEELNREVAGHTEQLQISRS |
..VGGQVSVEVDSAPG..LAKIL....SQY.VMAEQ.RK.D.EAW..TS.TEEL..EVAGHTEQ.Q.S.S | |
Retrocopy | --VGGQVSVEVDSAPGVGLAKILDNT*SQYAVMAEQTRK<DTEAW<VTSQTEELSWEVAGHTEQFQMSKS |
Parental | E-VTDLRRTLQGLEIELQSQLSMKAALEDTLAETEARFGAQLAHIQALISGVEAQLGDVRADSERQNQE |
E.VTD..RTL.GLEIELQ.QLSMKAALE...A.TEA...AQL..IQAL.SG.E.QLGDV.AD..R.... | |
Retrocopy | E<VTDRWRTLRGLEIELQWQLSMKAALEGHTAGTEACVEAQLVRIQALSSGAEVQLGDVCADHQRRPEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .79 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .39 RPM |
SRP007412_heart | 0 .00 RPM | 15 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .33 RPM |
SRP007412_liver | 6 .33 RPM | 0 .99 RPM |
SRP007412_testis | 0 .00 RPM | 1 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_959 |
Gorilla gorilla | retro_ggor_773 |
Pongo abelii | retro_pabe_820 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000029756 | 9 retrocopies | |
Equus caballus | ENSECAG00000014086 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007881 | 6 retrocopies | |
Homo sapiens | ENSG00000171345 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016901 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000016158 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000018653 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010787 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016132 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024306 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007908 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008416 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009168 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014403 | 2 retrocopies |