RetrogeneDB ID: | retro_etel_480 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_7929:67196..67914(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000007881 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.86 % |
Parental protein coverage: | 60.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | GYGGVLSTSDGLLSGNEKITMQNLNDRLASYLDKVRALETANTDLEVKIRDWYQKQGP-GP-ARDYSHYY |
G..G......G.LS.N...T.Q.L...LA.YLD.VRALE.ANT.LEVKI.DW..KQGP.GP...DYSHYY | |
Retrocopy | GRPGYI*QLSGFLSCN*-LTTQILKEGLATYLDQVRALEMANTKLEVKICDWSPKQGPRGP>TWDYSHYY |
Parental | KTIEDLRDQILGATIQNSKVVLQIDNARLAADDFRTKFETEQALRVSVEADINGLRRVLDELTLARADLE |
KTIE.L....LGATI.N.K.VLQIDNA.L.ADDF.TK.ETEQ.L....EADI.GL...LDELTL...DL. | |
Retrocopy | KTIEELQSKMLGATIENVKIVLQIDNAHLPADDFQTKLETEQTLCTRLEADIPGLHTELDELTLLSVDLG |
Parental | MQ-IEGLKEELAFLKKNHEEEISVLKAQVGGQVSVEVDSTPGIDLAKILNDMRSQYELMAEKNRKDAEAW |
MQ...G..E.LA.L.KNH..EISVLKA.V.....VEVDS.PGIDLAKI.NDM.SQYE.M.EKNRK.AEAW | |
Retrocopy | MQRWKG*REGLASLNKNHRLEISVLKALV----NVEVDSAPGIDLAKIQNDMKSQYEIMTEKNRKYAEAW |
Parental | FIKQTEELKLEVDVHTEKLQVSKTEVTDLRRTLQS |
FI.QTE.L..EV..H.E.L.VS..EV.DL...LQS | |
Retrocopy | FISQTENLNWEVTGHKEQLLVSEMEVSDLWWRLQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000029756 | 9 retrocopies | |
Equus caballus | ENSECAG00000014086 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007881 | 6 retrocopies | |
Homo sapiens | ENSG00000171345 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016901 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000016158 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000018653 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010787 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016132 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024306 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007908 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008416 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009168 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014403 | 2 retrocopies |