RetrogeneDB ID: | retro_cpor_653 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_21:12793282..12793658(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000021189 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.76 % |
Parental protein coverage: | 51.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAEDEQRKKIPLVPENLLKKRKAYQ-ALKATQAKQALLAKKEKAKRKVKEIRFKRLESFLRDSWRQRRDM |
MAE.EQ.KKIPLVPENLLKKRKAY..AL.ATQ.KQALLAK....K.KVK.IRFKRLESF.RDSWRQ..DM | |
Retrocopy | MAEEEQSKKIPLVPENLLKKRKAYK<ALRATQVKQALLAK----KKKVKKIRFKRLESFQRDSWRQQCDM |
Parental | VRVKRLEVKPRALEAPDKHSLAFVVRLQSINGVSLLVQ-NTIRLRLKKLFSGVFYSVGSVTI |
VRVK.LEVKP.AL.AP.KHSLA.VV.LQSIN.VSLLVQ....RLRLKKLFSGVF..V...T. | |
Retrocopy | VRVK*LEVKPLALGAPGKHSLALVVSLQSINRVSLLVQ<EATRLRLKKLFSGVFDKVNPQTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 16 .05 RPM |
SRP017611_kidney | 0 .31 RPM | 26 .38 RPM |
SRP017611_liver | 0 .09 RPM | 12 .58 RPM |
SRP040447_lung | 0 .68 RPM | 25 .45 RPM |
SRP040447_skeletal_muscle | 0 .29 RPM | 18 .98 RPM |