Parental gene:

ENSCPOG00000004251

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_3:13199074..13203398(-)


>ENSCPOG00000004251
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGTCGCCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCAGAGCAGTTGAGGAAACTGTTTATTGGTGGTCTGAGCTTTGAAACTACAGATGATAGTTTAAGAGAAC
ATTTTGAGAAATGGGGCACACTCACAGATTGTGTGGTAATGAGAGATCCCCAAACAAAACGCTCCAGGGGCTTCGGTTTT
GTGACTTACTCTTGTGTGGAAGAGGTGGATGCAGCAATGTGTGCTCGACCACACAAAGTTGATGGGCGTGTAGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCAGTAAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTA
AAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGAC
AGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCACGATACAGTTGATAAAATTGTTGTAGTTCA
GAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCAC
AAAGAGGTCGTGGAGGTGGCTCTGGAAATGTTCTGATTTTCCTTGGTGATGTTTTTGAAAGTGGAGGTAATTTCCTACTG
GCTCAGGTTCTTTGCTCTATTAATGATATAGTAGGTCATTTCATTGGTTTGACAATGTCTTTAAATGTTATAAATTTATT
GTTTGATCTACTTTATCTTTTAGGTGGGAACTATGGTGGTGGACCTGGTTACAGTAGTAGAGGAGGATATGGTGGAGGAC
CAGGATATGGAAACCAAGGTGGTGGATACGGTGGTGGTGGAGGAGGATATGATGGTTACAACGAAGGAGGCAATTTTGGT
GGTGGTAAGTTT

Library Parental gene expression (RPM)
SRP017611_liver 37 .52 RPM
SRP017611_kidney 60 .20 RPM
SRP017611_brain 46 .47 RPM
SRP040447_lung 88 .50 RPM
SRP040447_skeletal_muscle 28 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011920 possible_ortholog 4 retrogenes
retro_amel_1407, retro_amel_557, retro_amel_715, retro_amel_765,
Cavia porcellus ENSCPOG00000015619 other_paralog 5 retrogenes
retro_cpor_1110, retro_cpor_1318, retro_cpor_264, retro_cpor_274, retro_cpor_567,
Cavia porcellus ENSCPOG00000020972 within_species_paralog 1 retrogene
retro_cpor_1078,
Ficedula albicollis ENSFALG00000003215 ortholog_one2many 1 retrogene
retro_falb_15,
Gallus gallus ENSGALG00000009250 ortholog_one2many 1 retrogene
retro_ggal_10,
Monodelphis domestica ENSMODG00000019803 possible_ortholog 1 retrogene
retro_mdom_1590,
Mustela putorius furo ENSMPUG00000014103 ortholog_one2one 6 retrogenes
retro_mputfur_1141, retro_mputfur_1336, retro_mputfur_1545, retro_mputfur_603, retro_mputfur_674, retro_mputfur_779,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2many 1 retrogene
retro_psin_16,
Pan troglodytes ENSPTRG00000012676 ortholog_one2one 5 retrogenes
retro_ptro_1059, retro_ptro_2430, retro_ptro_2966, retro_ptro_683, retro_ptro_872,
Rattus norvegicus ENSRNOG00000001556 ortholog_one2one 11 retrogenes
retro_rnor_1510, retro_rnor_1665, retro_rnor_1869, retro_rnor_2053, retro_rnor_2659, retro_rnor_2669, retro_rnor_2713, retro_rnor_2776, retro_rnor_2809, retro_rnor_348, retro_rnor_959,
Sarcophilus harrisii ENSSHAG00000018255 possible_ortholog 1 retrogene
retro_shar_518,
Tursiops truncatus ENSTTRG00000014225 ortholog_one2many 3 retrogenes
retro_ttru_1459, retro_ttru_675, retro_ttru_9,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2many 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2many 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_65 94.42 66.36
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2. retro_cpor_1516 58.55 58.33
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3. retro_cpor_1543 97.78 69.44
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Download FASTA sequences of all ENSCPOG00000004251 retrocopies