RetrogeneDB ID: | retro_cpor_1318 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_7:27465467..27466066(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000013269 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRPDL | ||
Ensembl ID: | ENSCPOG00000015619 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.96 % |
Parental protein coverage: | 71.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AEGSKINASKNQQDDGYKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS |
AEGS.INASKN......K.FIGGLSWDTSKKDLT.YLS.FG.VVDCTIKTDPVT.R.RGF..VLF.DAA. | |
Retrocopy | AEGSEINASKNNN----KIFIGGLSWDTSKKDLTAYLSQFGRVVDCTIKTDPVTERARGF--VLFQDAAR |
Parental | VDKVLELKEHKLDGKLIDPKRAKALKGKEP-PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKT |
VDKVLELKEHKLDGKLI.P.R.KALK.KEP.PKKVFV..LSPDT.EEQIKEYFGAFG.IEN.ELPMDTKT | |
Retrocopy | VDKVLELKEHKLDGKLINP*RVKALKRKEP<PKKVFVAELSPDTFEEQIKEYFGAFGDIENTELPMDTKT |
Parental | NERRG-FCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRG |
NERRG.FCFITYTDE.PVKKL......QIGSGKCEIKV.QPKEV..QQQQ.Q..G.G....G...T.G | |
Retrocopy | NERRGGFCFITYTDEDPVKKLVRKQIPQIGSGKCEIKVSQPKEVNQQQQQPQE-GEGRCSWGSRWTQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 105 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .00 RPM |
SRP017611_liver | 0 .00 RPM | 55 .10 RPM |
SRP040447_lung | 0 .00 RPM | 89 .38 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 57 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014804 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000000160 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003275 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000004251 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000015619 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000020972 | 1 retrocopy | |
Equus caballus | ENSECAG00000022692 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001445 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000014452 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014753 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013805 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002501 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007178 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000011543 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002270 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009961 | 1 retrocopy |