Parental gene:

ENSOCUG00000002743

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:7:116878495..116883596(+)


>ENSOCUG00000002743
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCAGAGCAGTTGAGGAAACTGTTTATTGGTGGTCTGAGCTTTGAAACTACGGATGATAGTTTGAGAGAAC
ATTTTGAGAAATGGGGCACACTCACAGATTGTGTGGTAATGAGAGACCCCCAAACGAAACGTTCCAGGGGCTTTGGTTTT
GTGACTTACTCTTGTGTTGAAGAAGTGGATGCAGCAATGTGTGCTCGACCACACAAGGTTGATGGGCGTGTTGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCGGTAAAGCCTGGTGCCCATCTGACAGTGAAGAAGATTTTTGTTGGTGGTATTA
AAGAAGATACAGAGGAATATAATTTGAGAGACTACTTTGAGAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGAC
AGGCAGAGTGGGAAAAAAAGAGGATTTGCTTTTGTAACTTTCGACGATCATGATACAGTTGATAAAATCGTTGTTCAGAA
ATACCACACTATTAATGGGCATAGTTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGCTGGATCAC
CAAGAGGCCGTGGAGGGGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGC
GGTGGAAACTTTGGTGGAAGAGGTAGTTTTTTCATTATAATTCTTGGAAGTCCAGGTTCTTGCTGTTCTTTTGATTGTAT
CTTACCAGGCTTTGCAGTGTTAGGTGGCAACTATGGTGGTGGTCCTGGTTATAGCAGCAGAGGAGGCTATGGTGGTGGAC
CAGGATATGGAAACCAAGGTGGTGGATATGGTGGAGGAGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGAGGT

Library Parental gene expression (RPM)
SRP017611_brain 112 .86 RPM
SRP017611_kidney 104 .30 RPM
SRP017611_liver 57 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011920 possible_ortholog 4 retrogenes
retro_amel_1407, retro_amel_557, retro_amel_715, retro_amel_765,
Bos taurus ENSBTAG00000021580 possible_ortholog 8 retrogenes
retro_btau_1029, retro_btau_1310, retro_btau_1587, retro_btau_212, retro_btau_277, retro_btau_370, retro_btau_811, retro_btau_90,
Canis familiaris ENSCAFG00000013497 possible_ortholog 12 retrogenes
retro_cfam_1214, retro_cfam_1326, retro_cfam_1388, retro_cfam_1548, retro_cfam_1690, retro_cfam_1816, retro_cfam_265, retro_cfam_272, retro_cfam_400, retro_cfam_625, retro_cfam_65, retro_cfam_836,
Cavia porcellus ENSCPOG00000004251 possible_ortholog 3 retrogenes
retro_cpor_1516, retro_cpor_1543, retro_cpor_65,
Dasypus novemcinctus ENSDNOG00000019022 possible_ortholog 3 retrogenes
retro_dnov_540, retro_dnov_711, retro_dnov_959,
Ficedula albicollis ENSFALG00000003215 possible_ortholog 1 retrogene
retro_falb_15,
Felis catus ENSFCAG00000012146 possible_ortholog 5 retrogenes
retro_fcat_1231, retro_fcat_572, retro_fcat_662, retro_fcat_677, retro_fcat_842,
Homo sapiens ENSG00000170144 possible_ortholog 11 retrogenes
retro_hsap_1117, retro_hsap_1274, retro_hsap_1572, retro_hsap_209, retro_hsap_2194, retro_hsap_2664, retro_hsap_2951, retro_hsap_34, retro_hsap_4764, retro_hsap_665, retro_hsap_862,
Gallus gallus ENSGALG00000009250 possible_ortholog 1 retrogene
retro_ggal_10,
Gorilla gorilla ENSGGOG00000006130 possible_ortholog 6 retrogenes
retro_ggor_1001, retro_ggor_1197, retro_ggor_14, retro_ggor_1736, retro_ggor_576, retro_ggor_702,
Macropus eugenii ENSMEUG00000013622 possible_ortholog 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Macaca mulatta ENSMMUG00000001858 possible_ortholog 4 retrogenes
retro_mmul_1945, retro_mmul_2442, retro_mmul_386, retro_mmul_801,
Monodelphis domestica ENSMODG00000019803 possible_ortholog 1 retrogene
retro_mdom_1590,
Mustela putorius furo ENSMPUG00000014103 possible_ortholog 6 retrogenes
retro_mputfur_1141, retro_mputfur_1336, retro_mputfur_1545, retro_mputfur_603, retro_mputfur_674, retro_mputfur_779,
Mus musculus ENSMUSG00000059005 possible_ortholog 6 retrogenes
retro_mmus_133, retro_mmus_1359, retro_mmus_1409, retro_mmus_210, retro_mmus_3635, retro_mmus_60,
Oryctolagus cuniculus ENSOCUG00000013350 within_species_paralog 1 retrogene
retro_ocun_1675,
Oryctolagus cuniculus ENSOCUG00000013805 other_paralog 1 retrogene
retro_ocun_505,
Oryctolagus cuniculus ENSOCUG00000026424 other_paralog 3 retrogenes
retro_ocun_1800, retro_ocun_1811, retro_ocun_950,
Oryctolagus cuniculus ENSOCUG00000026859 other_paralog 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Otolemur garnettii ENSOGAG00000025948 possible_ortholog 3 retrogenes
retro_ogar_1685, retro_ogar_3010, retro_ogar_3175,
Otolemur garnettii ENSOGAG00000028132 possible_ortholog 7 retrogenes
retro_ogar_1869, retro_ogar_1924, retro_ogar_2222, retro_ogar_2590, retro_ogar_3215, retro_ogar_600, retro_ogar_814,
Pongo abelii ENSPPYG00000012967 possible_ortholog 1 retrogene
retro_pabe_450,
Pelodiscus sinensis ENSPSIG00000003011 possible_ortholog 1 retrogene
retro_psin_16,
Pan troglodytes ENSPTRG00000012676 possible_ortholog 5 retrogenes
retro_ptro_1059, retro_ptro_2430, retro_ptro_2966, retro_ptro_683, retro_ptro_872,
Pteropus vampyrus ENSPVAG00000010380 possible_ortholog 2 retrogenes
retro_pvam_1077, retro_pvam_326,
Rattus norvegicus ENSRNOG00000001556 possible_ortholog 11 retrogenes
retro_rnor_1510, retro_rnor_1665, retro_rnor_1869, retro_rnor_2053, retro_rnor_2659, retro_rnor_2669, retro_rnor_2713, retro_rnor_2776, retro_rnor_2809, retro_rnor_348, retro_rnor_959,
Sarcophilus harrisii ENSSHAG00000018255 ortholog_one2many 1 retrogene
retro_shar_518,
Sus scrofa ENSSSCG00000015988 possible_ortholog 6 retrogenes
retro_sscr_1110, retro_sscr_1152, retro_sscr_391, retro_sscr_621, retro_sscr_764, retro_sscr_927,
Ictidomys tridecemlineatus ENSSTOG00000025125 possible_ortholog 4 retrogenes
retro_itri_1444, retro_itri_1878, retro_itri_952, retro_itri_98,
Tarsius syrichta ENSTSYG00000012949 possible_ortholog 2 retrogenes
retro_tsyr_1480, retro_tsyr_2122,
Tursiops truncatus ENSTTRG00000014225 possible_ortholog 3 retrogenes
retro_ttru_1459, retro_ttru_675, retro_ttru_9,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2many 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2many 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_994 67.50 62.19
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2. retro_ocun_995 55.51 83.75
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Download FASTA sequences of all ENSOCUG00000002743 retrocopies