Parental gene:

PPA1, ENSCPOG00000014023

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_15:19576304..19609992(-)


>ENSCPOG00000014023
ATGAGCGGCTACAGCAGCGAGGAGCGCGCCGCGCCCTTCACCCTCGAGTACCGCGTCTTCCTCAAAAATGAAAAAGGACA
GTATGTATCTCCATTTCATGATATTCCGATTTATGCAGATAAGGACATATTCCACATGGTAGTTGAAGTTCCACGCTGGT
CTAATGCAAAAATGGAGATCGCTACAAAGGATCCTTTAAACCCAATTAAGCAAGACGTAAAAAAGGGGAAACTCCGTTAT
GTTGCAAATTTATTCCCTTATAAAGGATATATCTGGAACTATGGTGCCATCCCTCAGACTTGGGAAGACCCAGGACATAG
TGACAAACACACTGGCTGTTGTGGTGACAATGACCCAATTGATGTTTGTGAAATTGGAAGCAAGGTATGTGCAAGAGGTG
AGATAATCAGGGTGAAAGTTCTGGGCATCTTGGCTATGATTGACGAAGGAGAAACCGACTGGAAAGTCATTGCCATTAAT
GTGGATGATCCTGATGCAGCCAACTACAACGATATCAATGATGTTGAACGGCTGAAACCTGGCTACTTAGAAGCTACTGT
GGACTGGTTTAGAAGGTACAAGGTTCCTGATGGAAAACCAGAAAATCAGTTTGCTTTCAATGCAGAATTCAAAGATAAGA
ACTTTGCAGTTGATATCATTAAAAGCACTCATGACTATTGGAAAGCATTAGTAACTAAGAAGACAGACGGGAAAGGAATC
AGTTGCATGAACACAACGGTGTCTGAGAGCCCTTTCAAGTGTGACCCTGATGCTGCCAAAGCCATCGTGGACGCGTTACC
GCCACCATGTGACTCTGCCCACACAGTACCAACAGAGGTGGATAAGTGGTTCCATCACCAGAAAAAC

Library Parental gene expression (RPM)
SRP017611_brain 72 .76 RPM
SRP017611_kidney 40 .30 RPM
SRP017611_liver 63 .64 RPM
SRP040447_lung 78 .24 RPM
SRP040447_skeletal_muscle 53 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000180817 ortholog_one2one 2 retrogenes
retro_hsap_2756, retro_hsap_3267,
Loxodonta africana ENSLAFG00000004048 ortholog_one2one 1 retrogene
retro_lafr_990,
Myotis lucifugus ENSMLUG00000017790 ortholog_one2one 1 retrogene
retro_mluc_2469,
Macaca mulatta ENSMMUG00000006397 ortholog_one2one 1 retrogene
retro_mmul_1540,
Nomascus leucogenys ENSNLEG00000016098 possible_ortholog 1 retrogene
retro_nleu_7,
Oryctolagus cuniculus ENSOCUG00000016001 ortholog_one2one 2 retrogenes
retro_ocun_1373, retro_ocun_883,
Procavia capensis ENSPCAG00000006788 ortholog_one2one 1 retrogene
retro_pcap_247,
Pongo abelii ENSPPYG00000029405 ortholog_one2many 1 retrogene
retro_pabe_37,
Pan troglodytes ENSPTRG00000002585 ortholog_one2one 2 retrogenes
retro_ptro_1864, retro_ptro_2210,
Tupaia belangeri ENSTBEG00000008947 ortholog_one2one 3 retrogenes
retro_tbel_3560, retro_tbel_3561, retro_tbel_848,
Tarsius syrichta ENSTSYG00000005511 ortholog_one2one 1 retrogene
retro_tsyr_1856,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_615 77.78 83.04
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Download FASTA sequences of all ENSCPOG00000014023 retrocopies