RetrogeneDB ID: | retro_ptro_1864 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 3:18127607..18128473(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPA1 | ||
Ensembl ID: | ENSPTRG00000002585 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MNGFSTEERAAPFSLEYRVFLKNEKGQYISPFHDIPIYADKDVFHMVVEVPRWSNAKMEIATKDPLNPIK |
M.GFSTE...APFSL.YRVFLKNEKGQYISPFH.IPIYADKDVFH.VV.....SNAKMEIATKDPLNPIK | |
Retrocopy | MSGFSTEVHTAPFSL*YRVFLKNEKGQYISPFHNIPIYADKDVFHVVVGSTTLSNAKMEIATKDPLNPIK |
Parental | QDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVKV |
QDVKK.KLRYVANLF.YKGYIWNYGAIPQTW.DPGHND.HTGCCGD.DPIDVCEIGSKVCARGEIIG.KV | |
Retrocopy | QDVKKEKLRYVANLFLYKGYIWNYGAIPQTWKDPGHNDEHTGCCGDSDPIDVCEIGSKVCARGEIIGMKV |
Parental | LGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGKPE-NEFAFNAE |
LGILAMID.GET.WKVIAINVDDPDAAN.ND.NDVK.LKPGYLEATVDW.RRYKVPDGK.E.NEFAFNAE | |
Retrocopy | LGILAMIDKGETNWKVIAINVDDPDAANCNDTNDVKQLKPGYLEATVDWVRRYKVPDGKLE<NEFAFNAE |
Parental | FKDKDFAIDIIKSTHDHWKALVTKKTNGKGISCMNTTVSESPFKCDPDAARAIVDALPPPCESACTVPTD |
FKDKDFAID.IK.THDHWKALVTKK.NGKGISCMNTTVS.SPFKCDPDAARAIVDALPPPCESACTVPTD | |
Retrocopy | FKDKDFAIDTIKTTHDHWKALVTKKMNGKGISCMNTTVSKSPFKCDPDAARAIVDALPPPCESACTVPTD |
Parental | VDKWFHHQKN |
VDKWFH.QKN | |
Retrocopy | VDKWFHYQKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .09 RPM | 99 .35 RPM |
SRP007412_cerebellum | 0 .04 RPM | 81 .09 RPM |
SRP007412_heart | 0 .03 RPM | 48 .41 RPM |
SRP007412_kidney | 0 .08 RPM | 69 .01 RPM |
SRP007412_liver | 0 .03 RPM | 95 .45 RPM |
SRP007412_testis | 0 .11 RPM | 65 .97 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2756 |
Macaca mulatta | retro_mmul_1540 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014023 | 1 retrocopy | |
Homo sapiens | ENSG00000180817 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000004048 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017790 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006397 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016098 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016001 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000006788 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002585 | 2 retrocopies |
retro_ptro_1864 , retro_ptro_2210,
|
Tupaia belangeri | ENSTBEG00000008947 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005511 | 1 retrocopy |