RetrogeneDB ID: | retro_tbel_3561 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_144788:45016..45580(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPA1 | ||
Ensembl ID: | ENSTBEG00000008947 | ||
Aliases: | None | ||
Description: | pyrophosphatase (inorganic) 1 [Source:HGNC Symbol;Acc:9226] |
Percent Identity: | 92.02 % |
Parental protein coverage: | 65.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GQYISPFHDIPIYSDKDVFHMVAGVPRWSNAKMEIATKDPLNPIKQDVKKGKLRYVANLFPYKGYIWNYG |
GQYISPFHDIPIYSDKDVFH.V..VPRWSNAKMEIATKDPL.PIKQDVKKGKL.YVANLFPYKGYIWNYG | |
Retrocopy | GQYISPFHDIPIYSDKDVFHLVVEVPRWSNAKMEIATKDPLKPIKQDVKKGKLHYVANLFPYKGYIWNYG |
Parental | AIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVKVLGILAMIDEGETDWKVIAINVDDPD |
AIPQTWEDPGH.DKHTGCCGDNDPIDVCEIGSKVC.RGEIIGVK.LGILAM.DEGETDWKV.AI.V.DPD | |
Retrocopy | AIPQTWEDPGHSDKHTGCCGDNDPIDVCEIGSKVCSRGEIIGVKLLGILAMTDEGETDWKVTAIHVEDPD |
Parental | AANYNDINDVKRLKPGYLEATVDWFRRYKVPDGKPENEFAFNAEFKDK |
AANYNDINDVKRLKPGYLEATVDWFRRYKV.D.KPENEFAFNAE.KDK | |
Retrocopy | AANYNDINDVKRLKPGYLEATVDWFRRYKVLDAKPENEFAFNAELKDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014023 | 1 retrocopy | |
Homo sapiens | ENSG00000180817 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000004048 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017790 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006397 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016098 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016001 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000006788 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029405 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002585 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008947 | 3 retrocopies |
retro_tbel_3560, retro_tbel_3561 , retro_tbel_848,
|
Tarsius syrichta | ENSTSYG00000005511 | 1 retrocopy |