Parental gene:

RPL27, ENSCPOG00000027359

Aliases:None
Description:60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:H0W9V1]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_53:12753490..12754341(+)


>ENSCPOG00000027359
CTGGCCCAGAACATCGATGATGGCACCTCCGACCGCCCCTACAGTCACGCCTTAGTGGCCGGAATCGACCGCTACCCCCG
CAAAGTGACGGCCGCCATGGGCAAGAAGAAGATCGCCAAGAGATCGAAGATAAAGTCCTTCGTGAAGGTTTACAACTACA
ACCACCTCATGCCCACCAGGTACTCTGTTGATATCCCCTTGGACAAGACCGTGGTCAACAAGGATGTCTTCAGAGACCCG
GCCCTGAAGCGCAAGGCCCGGCGGGAGGCTAAGGTCAAGTTTGAGGAGAGGTACAAGACGGGCAAGAACAAGTGGTTCTT
CCAGAAGCTTCGGTTT

Library Parental gene expression (RPM)
SRP017611_brain 62 .41 RPM
SRP017611_kidney 122 .17 RPM
SRP017611_liver 60 .89 RPM
SRP040447_lung 116 .04 RPM
SRP040447_skeletal_muscle 101 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000200 possible_ortholog 3 retrogenes
retro_amel_122, retro_amel_37, retro_amel_674,
Bos taurus ENSBTAG00000017441 possible_ortholog 6 retrogenes
retro_btau_1113, retro_btau_129, retro_btau_1565, retro_btau_1855, retro_btau_338, retro_btau_394,
Canis familiaris ENSCAFG00000014630 possible_ortholog 6 retrogenes
retro_cfam_1193, retro_cfam_2109, retro_cfam_339, retro_cfam_364, retro_cfam_947, retro_cfam_959,
Callithrix jacchus ENSCJAG00000013067 possible_ortholog 9 retrogenes
retro_cjac_1345, retro_cjac_1350, retro_cjac_1543, retro_cjac_1630, retro_cjac_2210, retro_cjac_275, retro_cjac_2828, retro_cjac_369, retro_cjac_776,
Felis catus ENSFCAG00000013142 possible_ortholog 6 retrogenes
retro_fcat_1026, retro_fcat_1184, retro_fcat_1824, retro_fcat_228, retro_fcat_698, retro_fcat_78,
Gorilla gorilla ENSGGOG00000026039 possible_ortholog 6 retrogenes
retro_ggor_1741, retro_ggor_1852, retro_ggor_2546, retro_ggor_2630, retro_ggor_298, retro_ggor_907,
Loxodonta africana ENSLAFG00000014220 possible_ortholog 3 retrogenes
retro_lafr_443, retro_lafr_739, retro_lafr_965,
Myotis lucifugus ENSMLUG00000004119 possible_ortholog 1 retrogene
retro_mluc_359,
Macaca mulatta ENSMMUG00000008090 possible_ortholog 7 retrogenes
retro_mmul_1646, retro_mmul_1997, retro_mmul_418, retro_mmul_478, retro_mmul_52, retro_mmul_680, retro_mmul_925,
Monodelphis domestica ENSMODG00000015128 possible_ortholog 1 retrogene
retro_mdom_1141,
Mus musculus ENSMUSG00000063316 possible_ortholog 2 retrogenes
retro_mmus_223, retro_mmus_277,
Nomascus leucogenys ENSNLEG00000011901 possible_ortholog 2 retrogenes
retro_nleu_334, retro_nleu_45,
Oryctolagus cuniculus ENSOCUG00000003872 possible_ortholog 1 retrogene
retro_ocun_263,
Otolemur garnettii ENSOGAG00000003940 possible_ortholog 14 retrogenes
retro_ogar_1091, retro_ogar_1297, retro_ogar_1478, retro_ogar_1692, retro_ogar_1887, retro_ogar_2189, retro_ogar_2354, retro_ogar_2625, retro_ogar_2687, retro_ogar_2915, retro_ogar_3207, retro_ogar_3294, retro_ogar_3381, retro_ogar_618,
Rattus norvegicus ENSRNOG00000020674 possible_ortholog 8 retrogenes
retro_rnor_1150, retro_rnor_125, retro_rnor_1257, retro_rnor_1968, retro_rnor_2594, retro_rnor_2989, retro_rnor_386, retro_rnor_414,
Sarcophilus harrisii ENSSHAG00000012042 possible_ortholog 4 retrogenes
retro_shar_10, retro_shar_253, retro_shar_730, retro_shar_741,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_677 70.43 100.00
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2. retro_cpor_715 70.93 75.89
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3. retro_cpor_1178 62.28 100.00
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Download FASTA sequences of all ENSCPOG00000027359 retrocopies