RetrogeneDB ID: | retro_mmus_223 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:85510811..85511222(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000063548 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl27 | ||
Ensembl ID: | ENSMUSG00000063316 | ||
Aliases: | None | ||
Description: | ribosomal protein L27 [Source:MGI Symbol;Acc:MGI:98036] |
Percent Identity: | 86.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKS |
M.KFMKPGKVVLVLAGRYSG.KAVI.KNID.GTSDRPYS..LVAGID.YP.KVTAAMGKKKI.KRSK.KS | |
Retrocopy | MEKFMKPGKVVLVLAGRYSGHKAVIMKNIDNGTSDRPYSRVLVAGIDCYPQKVTAAMGKKKISKRSKFKS |
Parental | FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF |
.VKVYNYNHL.PTR.SV.I.LDKT.VNKDVFRDPALKRKAR.EAKVK.EERYKTGKNK.FFQKLRF | |
Retrocopy | IVKVYNYNHLIPTRHSVAILLDKTAVNKDVFRDPALKRKARQEAKVKLEERYKTGKNKGFFQKLRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .95 RPM |
SRP007412_heart | 0 .03 RPM | 29 .57 RPM |
SRP007412_kidney | 0 .02 RPM | 19 .35 RPM |
SRP007412_liver | 0 .00 RPM | 22 .64 RPM |
SRP007412_testis | 0 .18 RPM | 10 .52 RPM |