Parental gene:

RPL27, ENSLAFG00000014220

Aliases:None
Description:60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:G3TCT6]
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_31:24532682..24535360(+)


>ENSLAFG00000014220
ATGGGCAAGTTCATGAAACCTGGGAAGGTGGTGCTGGTCCTGGCCGGACGCTACTCCGGACGTAAGGCCGTCATTGTGAA
GAACATTGATGATGGCACCTCAGACCGCCCCTACAGCCATGCTCTGGTAGCTGGAATTGACCGTTATCCCCGCAAAGTGA
CAGCTGCCATGGGCAAGAAGAAAATTGCCAAAAGGTCAAAGATCAAGTCTTTTGTGAAAGTGTATAACTATAATCACCTC
ATGCCCACAAGGTATTCGGTGGATATCCCCTTGGACAAAACTGTTGTCAACAAGGATGTCTTCAGAGACCCTGCTCTTAA
ACGCAAGGCCCGGCGGGAGGCCAAAGTCAAATTTGAGGAGAGGTACAAGACGGGCAAAAACAAGTGGTTCTTCCAGAAGC
TGCGGTTTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000200 possible_ortholog 3 retrogenes
retro_amel_122, retro_amel_37, retro_amel_674,
Bos taurus ENSBTAG00000017441 possible_ortholog 6 retrogenes
retro_btau_1113, retro_btau_129, retro_btau_1565, retro_btau_1855, retro_btau_338, retro_btau_394,
Canis familiaris ENSCAFG00000014630 possible_ortholog 6 retrogenes
retro_cfam_1193, retro_cfam_2109, retro_cfam_339, retro_cfam_364, retro_cfam_947, retro_cfam_959,
Callithrix jacchus ENSCJAG00000013067 possible_ortholog 9 retrogenes
retro_cjac_1345, retro_cjac_1350, retro_cjac_1543, retro_cjac_1630, retro_cjac_2210, retro_cjac_275, retro_cjac_2828, retro_cjac_369, retro_cjac_776,
Cavia porcellus ENSCPOG00000027359 possible_ortholog 3 retrogenes
retro_cpor_1178, retro_cpor_677, retro_cpor_715,
Dipodomys ordii ENSDORG00000010907 possible_ortholog 6 retrogenes
retro_dord_154, retro_dord_335, retro_dord_477, retro_dord_527, retro_dord_601, retro_dord_784,
Equus caballus ENSECAG00000007500 possible_ortholog 1 retrogene
retro_ecab_132,
Echinops telfairi ENSETEG00000002811 ortholog_one2one 23 retrogenes
retro_etel_1230, retro_etel_1250, retro_etel_1302, retro_etel_1312, retro_etel_1453, retro_etel_1496, retro_etel_160, retro_etel_177, retro_etel_2055, retro_etel_2170, retro_etel_278, retro_etel_306, retro_etel_349, retro_etel_415, retro_etel_461, retro_etel_467, retro_etel_548, retro_etel_555, retro_etel_751, retro_etel_753, retro_etel_775, retro_etel_805, retro_etel_971,
Felis catus ENSFCAG00000013142 possible_ortholog 6 retrogenes
retro_fcat_1026, retro_fcat_1184, retro_fcat_1824, retro_fcat_228, retro_fcat_698, retro_fcat_78,
Homo sapiens ENSG00000131469 possible_ortholog 6 retrogenes
retro_hsap_1161, retro_hsap_1312, retro_hsap_2112, retro_hsap_2204, retro_hsap_238, retro_hsap_3787,
Gorilla gorilla ENSGGOG00000026039 possible_ortholog 6 retrogenes
retro_ggor_1741, retro_ggor_1852, retro_ggor_2546, retro_ggor_2630, retro_ggor_298, retro_ggor_907,
Microcebus murinus ENSMICG00000014214 possible_ortholog 5 retrogenes
retro_mmur_1340, retro_mmur_1498, retro_mmur_1542, retro_mmur_673, retro_mmur_695,
Myotis lucifugus ENSMLUG00000004119 possible_ortholog 1 retrogene
retro_mluc_359,
Macaca mulatta ENSMMUG00000008090 possible_ortholog 7 retrogenes
retro_mmul_1646, retro_mmul_1997, retro_mmul_418, retro_mmul_478, retro_mmul_52, retro_mmul_680, retro_mmul_925,
Monodelphis domestica ENSMODG00000015128 ortholog_one2many 1 retrogene
retro_mdom_1141,
Mustela putorius furo ENSMPUG00000009913 possible_ortholog 11 retrogenes
retro_mputfur_1041, retro_mputfur_1108, retro_mputfur_1182, retro_mputfur_1307, retro_mputfur_1530, retro_mputfur_303, retro_mputfur_413, retro_mputfur_595, retro_mputfur_675, retro_mputfur_735, retro_mputfur_980,
Mus musculus ENSMUSG00000063316 possible_ortholog 2 retrogenes
retro_mmus_223, retro_mmus_277,
Nomascus leucogenys ENSNLEG00000011901 possible_ortholog 2 retrogenes
retro_nleu_334, retro_nleu_45,
Oryctolagus cuniculus ENSOCUG00000003872 possible_ortholog 1 retrogene
retro_ocun_263,
Otolemur garnettii ENSOGAG00000003940 possible_ortholog 14 retrogenes
retro_ogar_1091, retro_ogar_1297, retro_ogar_1478, retro_ogar_1692, retro_ogar_1887, retro_ogar_2189, retro_ogar_2354, retro_ogar_2625, retro_ogar_2687, retro_ogar_2915, retro_ogar_3207, retro_ogar_3294, retro_ogar_3381, retro_ogar_618,
Procavia capensis ENSPCAG00000013249 ortholog_one2one 4 retrogenes
retro_pcap_123, retro_pcap_146, retro_pcap_203, retro_pcap_227,
Pan troglodytes ENSPTRG00000009232 possible_ortholog 6 retrogenes
retro_ptro_127, retro_ptro_1673, retro_ptro_208, retro_ptro_2569, retro_ptro_794, retro_ptro_900,
Pteropus vampyrus ENSPVAG00000008817 possible_ortholog 4 retrogenes
retro_pvam_1084, retro_pvam_1231, retro_pvam_25, retro_pvam_509,
Rattus norvegicus ENSRNOG00000020674 possible_ortholog 8 retrogenes
retro_rnor_1150, retro_rnor_125, retro_rnor_1257, retro_rnor_1968, retro_rnor_2594, retro_rnor_2989, retro_rnor_386, retro_rnor_414,
Sorex araneus ENSSARG00000011131 possible_ortholog 10 retrogenes
retro_sara_254, retro_sara_292, retro_sara_493, retro_sara_498, retro_sara_547, retro_sara_611, retro_sara_62, retro_sara_672, retro_sara_685, retro_sara_696,
Sarcophilus harrisii ENSSHAG00000012042 ortholog_many2many 4 retrogenes
retro_shar_10, retro_shar_253, retro_shar_730, retro_shar_741,
Sus scrofa ENSSSCG00000025507 possible_ortholog 5 retrogenes
retro_sscr_109, retro_sscr_1154, retro_sscr_576, retro_sscr_683, retro_sscr_943,
Ictidomys tridecemlineatus ENSSTOG00000020555 possible_ortholog 5 retrogenes
retro_itri_1295, retro_itri_1812, retro_itri_283, retro_itri_836, retro_itri_926,
Tarsius syrichta ENSTSYG00000003167 possible_ortholog 12 retrogenes
retro_tsyr_1032, retro_tsyr_1154, retro_tsyr_1711, retro_tsyr_2036, retro_tsyr_381, retro_tsyr_476, retro_tsyr_602, retro_tsyr_787, retro_tsyr_816, retro_tsyr_822, retro_tsyr_95, retro_tsyr_989,
Tursiops truncatus ENSTTRG00000011739 possible_ortholog 2 retrogenes
retro_ttru_1049, retro_ttru_1535,
Vicugna pacos ENSVPAG00000002574 possible_ortholog 1 retrogene
retro_vpac_324,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_443 75.47 77.94
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2. retro_lafr_739 76.52 96.32
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3. retro_lafr_965 71.74 100.00
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Download FASTA sequences of all ENSLAFG00000014220 retrocopies