RetrogeneDB ID: | retro_ggor_2546 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:129348373..129348781(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000131469 | ||
Ensembl ID: | ENSGGOG00000026039 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:G3S8W1] |
Percent Identity: | 88.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKS |
MGKFMK.G.VVLVLAG.YSG.KA.IVKNIDDGT.DRPYSHALVAGIDR.PRKVTAAMGKKKI.KRSKIKS | |
Retrocopy | MGKFMKAGTVVLVLAGCYSGCKAIIVKNIDDGTLDRPYSHALVAGIDRCPRKVTAAMGKKKISKRSKIKS |
Parental | FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF |
FVKVYN.NHLMPTRYSVDIPLDKTV.NKDVFRDP.LK.KAR.EAKVKFEERYKTGKNK.FFQKL.F | |
Retrocopy | FVKVYNHNHLMPTRYSVDIPLDKTVINKDVFRDPTLKHKAR*EAKVKFEERYKTGKNKRFFQKLWF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 138 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 131 .47 RPM |
SRP007412_heart | 0 .00 RPM | 125 .77 RPM |
SRP007412_kidney | 0 .00 RPM | 178 .23 RPM |
SRP007412_liver | 0 .00 RPM | 209 .68 RPM |
SRP007412_testis | 0 .00 RPM | 146 .90 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3787 |
Pan troglodytes | retro_ptro_2569 |
Macaca mulatta | retro_mmul_1646 |