RetrogeneDB ID: | retro_mdom_1141 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:228527661..228527926(-) | ||
Located in intron of: | ENSMODG00000020267 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL27 | ||
Ensembl ID: | ENSMODG00000015128 | ||
Aliases: | None | ||
Description: | ribosomal protein L27 [Source:HGNC Symbol;Acc:10328] |
Percent Identity: | 67.42 % |
Parental protein coverage: | 64.71 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | YPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPVLKRKARREAKVKF |
YP...T.AMG..KI.KR....SFVKV.NYNHL..T...V.I.LDKTVVNKDV..DPV.K..ARR.AK.KF | |
Retrocopy | YP*TMTSAMG*NKIVKRLNKTSFVKVCNYNHLILTKCPVNILLDKTVVNKDVIHDPVIKY*ARRLAKIKF |
Parental | EERYKT-GKNKWFFQKLRF |
EERYKT..KNKWFFQKL.F | |
Retrocopy | EERYKT>AKNKWFFQKLWF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |