Parental gene:

NKAP, ENSDNOG00000000072

Aliases:None
Description:NFKB activating protein [Source:HGNC Symbol;Acc:29873]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2629:110033..166779(-)


>ENSDNOG00000000072
ATGGCGCCGGTGTCCCGGTCGCGCAGTCCGGAGGGGGTGGCCTCCGGCTCCGCGGGAAAGCGTCGCAGTTTGTCGAAGAG
CCCCAAGCCCAGCAAAGCCGCCCGCTCCCCGCGGGGTCGCCGCTCTCGCTCGCGCTCGTGTCCTCGGTCCGGGGACCGGA
ATGGCCTCGGGCATCAGCTGGGGTGTCTCAGCCAAGGCTCCCGAAACCATTCCTACCGCTCCCGCTCGCGGTCTCGCTCT
CGAGAGCGCCCTTCTGGGCCTCGGGGCACCCCCTTCGCTTCTGCTGCTTCGTCCGCCTATTACGGAGGCTACTCGCGCCC
CTATGGGGGCGACAAGCCGTGGCCTAGCCTCCTGGACAAGGAGAGGGAGGAGAGCCTGCGGCAGAAGAGATTAAGTGAGA
GAGAGAGGATTGGAGAATTGGGAGCTCCTGAAGTATGGGGACTTTCTCCAAAAAATCCTGAACCAGACTCTGATGAACAT
ACACCAGTGGAGGATGAAGAGCCAAAGAAAAGCACTTCATCAACTTCTACTTCAGAAGATGAAAAAAAGAAGAAGAAGAA
GTCTGCTCGTTCAAAAGAAAGGTCCAAGAAAAGAAGGAAGAAAAAATCATCCAAAAGAAAACACAAGAAGTATTCTGATG
ATAGTGACAGTGACTCTGATTCTGAAACAGACTCTAGCGATGAAGATACAAAACGAAGAGCAAAGAAAGCCAAGAAAAAG
GAAAAGAAGAAGAAACACAGATCGAAGAAATACAAGAAAAAGAAATCTAAAAAGAGTAGAAAAGAAACCAGTGATTCAAG
CTCTAAAGATTCTCAAGAAGAGTTTCTGGAGAATCCCTGGAAGGATCGATCAAAACCTGAAGAACCCTCAGATTTGATTG
GACCAGAGGCTCCAAAGTCACTTGCCTCTCAAGATGATAAACCTTTGAACTATGGCCATGCTCTGTTACCTGGTGAAGGT
GCAGCTATGGCTGAATATGTAAAAGCTGGAAAACGTATCCCACGAAGAGGTGAAATTGGCTTGACAAGTGAAGAAATTGC
ATCCTTTGAATGCTCAGGTTACGTGATGAGTGGTAGTAGGCATCGCCGAATGGAGGCTGTGAGACTGCGAAAAGAGAACC
AGATCTATAGCGCTGATGAGAAGAGAGCCCTTGCATCCTTTAACCAAGAAGAGAGACGAAAGAGAGAGAACAAGATTCTG
GCCAGTTTTCGAGAGATGGTATACAGAAAGACCAAAGGGAAGGATGACAAATAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 15 .75 RPM
SRP012922_cerebellum 12 .51 RPM
SRP012922_heart 6 .96 RPM
SRP012922_kidney 20 .53 RPM
SRP012922_liver 8 .20 RPM
SRP012922_lung 25 .05 RPM
SRP012922_quadricep_muscle 10 .21 RPM
SRP012922_spleen 24 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018433 ortholog_one2one 1 retrogene
retro_cfam_172,
Echinops telfairi ENSETEG00000001007 ortholog_one2many 1 retrogene
retro_etel_1882,
Felis catus ENSFCAG00000004392 ortholog_one2one 1 retrogene
retro_fcat_10,
Homo sapiens ENSG00000101882 ortholog_one2one 1 retrogene
retro_hsap_15,
Loxodonta africana ENSLAFG00000002962 ortholog_one2one 1 retrogene
retro_lafr_37,
Macaca mulatta ENSMMUG00000012382 ortholog_one2one 1 retrogene
retro_mmul_121,
Mus musculus ENSMUSG00000016409 ortholog_one2one 1 retrogene
retro_mmus_279,
Nomascus leucogenys ENSNLEG00000014922 ortholog_one2one 1 retrogene
retro_nleu_88,
Otolemur garnettii ENSOGAG00000001004 ortholog_one2one 1 retrogene
retro_ogar_239,
Pongo abelii ENSPPYG00000020679 ortholog_one2one 1 retrogene
retro_pabe_198,
Pan troglodytes ENSPTRG00000022233 ortholog_one2one 1 retrogene
retro_ptro_117,
Rattus norvegicus ENSRNOG00000031169 ortholog_one2one 1 retrogene
retro_rnor_93,
Sus scrofa ENSSSCG00000012613 ortholog_one2one 1 retrogene
retro_sscr_13,
Ictidomys tridecemlineatus ENSSTOG00000001134 ortholog_one2one 1 retrogene
retro_itri_73,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_50 77.97 56.59
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Download FASTA sequences of all ENSDNOG00000000072 retrocopies