RetrogeneDB ID: | retro_cfam_172 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 35:25399160..25400378(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000025009 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NKAP | ||
Ensembl ID: | ENSCAFG00000018433 | ||
Aliases: | None | ||
Description: | NFKB activating protein [Source:HGNC Symbol;Acc:29873] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 93.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDDEPKKSSTSASTSEEEKKKKKKSGHSKERSKKRR |
RL.ERERIGELGAPEVWGLSPK.PE.DSDEHTPVEDD..K...T..S.S..E.K.KK....S...SKK.R | |
Retrocopy | RLKERERIGELGAPEVWGLSPKFPELDSDEHTPVEDDRAKAQKTAGSESSSEGKRKKA---SRSKSKKKR |
Parental | KKKSSKRKHKKYSDDSDSDSDSDTDSSDEDTKRRSKKAKKKEKKKKHRSKKYKKKKSKKSRKDSSDSSSK |
KKKS.K.KH.KYS.DSD..SDSD.DSS..D.K.R.KKA.KKEKKKKHR..K.KKKK..K..K.SSDSS.K | |
Retrocopy | KKKS-KKKHRKYSNDSDGNSDSDMDSSSDDDKKRAKKARKKEKKKKHRARKNKKKK--KTKKESSDSSFK |
Parental | DSQEEFLENPWKDRSKPEEPSDLIGPEAPKTLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEI |
DS..E.LE..W...SK.....DLIGPEAP....SQ..KPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEI | |
Retrocopy | DSEGELLEDIWIKQSKIADTMDLIGPEAPIIHTSQEEKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEI |
Parental | GLTSEEIASFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYR |
GLTSEEIASFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYR | |
Retrocopy | GLTSEEIASFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYR |
Parental | KTKGKDDK |
KTKGKDDK | |
Retrocopy | KTKGKDDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .17 RPM | 11 .00 RPM |
SRP017611_brain | 0 .40 RPM | 9 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .69 RPM |
SRP017611_liver | 0 .00 RPM | 6 .67 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
BM537189 | 25399452 | 25399882 | 100 | 430 | 0 | 430 |
Species | RetrogeneDB ID |
---|---|
Sus scrofa | retro_sscr_13 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018433 | 1 retrocopy |
retro_cfam_172 ,
|
Dasypus novemcinctus | ENSDNOG00000000072 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001007 | 1 retrocopy | |
Felis catus | ENSFCAG00000004392 | 1 retrocopy | |
Homo sapiens | ENSG00000101882 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002962 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012382 | 1 retrocopy | |
Mus musculus | ENSMUSG00000016409 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014922 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001004 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020679 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022233 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000031169 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012613 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001134 | 1 retrocopy |