Parental gene:

TOMM20, ENSEEUG00000000221

Aliases:None
Description:translocase of outer mitochondrial membrane 20 homolog (yeast) [Source:HGNC Symbol;Acc:20947]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_5016:40965..52256(-)


>ENSEEUG00000000221
ATGGTGGGCCGGAACAGCGCCATCGCCGCGGGTGTCTGTGGGGCTCTCTTCATCGGGTACTGCATTTACTTCGACCGCAA
GAGACGGAGTGACCCCAACTTCAAGAACAGGCTGCGAGAACGAAGAAAGAAGCAAAAGCTTGCTAAGGAGAGAGCGGGAC
TTTCTAAGTTACCTGACCTTAAAGATGCTGAGGCTGTTCAGAAGTTCTTCCTTGAAGAAATACAACTTGGTGAAGAGCTA
CTAGCCCAAGGTGAATATGAGAAAGGTGTGGACCATCTGACAAATGCGATTGCTGTGTGTGGACAGCCACAGCGGTTACT
GCAGGTGTTACAGCGGACTCTTCCACCACCAGTGTTCCAGATGCTTCTGACTAAGCTTTCCACGATTAGTCAGAAAATTG
TGAGTGCTCAAAGTTTGGCTGAAGATGACGTGGAATGA

Library Parental gene expression (RPM)
SRP017611_brain 110 .71 RPM
SRP017611_kidney 95 .27 RPM
SRP017611_liver 45 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000000562 ortholog_one2one 5 retrogenes
retro_btau_1025, retro_btau_1147, retro_btau_1357, retro_btau_492, retro_btau_533,
Myotis lucifugus ENSMLUG00000016218 ortholog_one2one 1 retrogene
retro_mluc_644,
Macaca mulatta ENSMMUG00000007136 possible_ortholog 2 retrogenes
retro_mmul_1255, retro_mmul_273,
Monodelphis domestica ENSMODG00000008452 ortholog_one2many 6 retrogenes
retro_mdom_1112, retro_mdom_1172, retro_mdom_1297, retro_mdom_1527, retro_mdom_1568, retro_mdom_838,
Mus musculus ENSMUSG00000093904 ortholog_one2one 12 retrogenes
retro_mmus_1437, retro_mmus_1669, retro_mmus_1698, retro_mmus_1990, retro_mmus_2026, retro_mmus_2141, retro_mmus_3142, retro_mmus_3311, retro_mmus_3637, retro_mmus_3655, retro_mmus_457, retro_mmus_935,
Oryctolagus cuniculus ENSOCUG00000021470 ortholog_one2one 2 retrogenes
retro_ocun_1495, retro_ocun_795,
Otolemur garnettii ENSOGAG00000032693 ortholog_one2one 2 retrogenes
retro_ogar_3167, retro_ogar_507,
Pteropus vampyrus ENSPVAG00000015157 ortholog_one2one 1 retrogene
retro_pvam_346,
Rattus norvegicus ENSRNOG00000019980 ortholog_one2one 4 retrogenes
retro_rnor_1191, retro_rnor_1958, retro_rnor_1983, retro_rnor_2103,
Sarcophilus harrisii ENSSHAG00000015876 ortholog_one2one 3 retrogenes
retro_shar_272, retro_shar_512, retro_shar_669,
Ictidomys tridecemlineatus ENSSTOG00000027564 possible_ortholog 3 retrogenes
retro_itri_248, retro_itri_71, retro_itri_820,
Tupaia belangeri ENSTBEG00000003827 ortholog_one2one 26 retrogenes
retro_tbel_1483, retro_tbel_2215, retro_tbel_2239, retro_tbel_2240, retro_tbel_2340, retro_tbel_2348, retro_tbel_2440, retro_tbel_2472, retro_tbel_2548, retro_tbel_2610, retro_tbel_2619, retro_tbel_3000, retro_tbel_3182, retro_tbel_3204, retro_tbel_3674, retro_tbel_3687, retro_tbel_3729, retro_tbel_3808, retro_tbel_3895, retro_tbel_3949, retro_tbel_4068, retro_tbel_4096, retro_tbel_4136, retro_tbel_4596, retro_tbel_4625, retro_tbel_600,
Tursiops truncatus ENSTTRG00000002200 ortholog_one2one 4 retrogenes
retro_ttru_1114, retro_ttru_183, retro_ttru_870, retro_ttru_982,
Vicugna pacos ENSVPAG00000003980 ortholog_one2one 1 retrogene
retro_vpac_252,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_544 74.24 88.28
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Download FASTA sequences of all ENSEEUG00000000221 retrocopies