RetrogeneDB ID: | retro_mdom_1172 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:352370265..352370618(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000007612 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000008452 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.33 % |
Parental protein coverage: | 84.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | CGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAG-LSKLPDLKDAEAVQKFFLEEIQLGEELL |
C.ALFIGYC.YFDRKR.SDPNFK.....R.KKQKLAKERAG.LSKLPDLKD..AVQKFFLEEIQLGEELL | |
Retrocopy | CHALFIGYCMYFDRKRWSDPNFKKQAL-RTKKQKLAKERAG<LSKLPDLKDTQAVQKFFLEEIQLGEELL |
Parental | AQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQ |
AQGE.EKGVDHLTNAIA.CGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQ | |
Retrocopy | AQGEHEKGVDHLTNAIALCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |