Parental gene:

TOMM20, ENSBTAG00000000562

Aliases:None
Description:Mitochondrial import receptor subunit TOM20 homolog [Source:UniProtKB/Swiss-Prot;Acc:A6H7B1]
Organism:Cow (Bos taurus)
Coordinates:28:7926959..7941655(-)


>ENSBTAG00000000562
ATGGTGGGCCGGAACAGCGCCATCGCCGCCGGCGTGTGCGGGGCCCTTTTCATCGGTTACTGCATTTACTTCGACCGCAA
GAGACGGAGTGACCCCAACTTCAAGAACAGGCTGCGAGAACGAAGAAAGAAACAGAAGCTTGCCAAGGAGAGAGCTGGGC
TTTCCAAGTTACCTGACCTTAAAGATGCTGAAGCCGTTCAGAAATTCTTTCTAGAAGAAATACAGCTTGGTGAAGAATTA
CTAGCTCAAGGTGAATATGAGAAGGGTGTGGACCATCTGACAAATGCGATTGCTGTGTGTGGACAGCCACAGCAGTTACT
GCAAGTATTGCAACAAACTCTTCCGCCACCAGTGTTCCAGATGCTTCTGACTAAGCTCCCAACAATTAGTCAGAGAATTG
TAAGTGCTCAGAGCTTGGCTGAAGATGATGTGGAATGA

Library Parental gene expression (RPM)
ERP005899_liver 84 .86 RPM
ERP005899_muscle 91 .22 RPM
SRP017611_brain 90 .13 RPM
SRP017611_kidney 77 .29 RPM
SRP017611_liver 31 .94 RPM
SRP030211_testis 170 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002383 possible_ortholog 7 retrogenes
retro_chof_1381, retro_chof_1699, retro_chof_2252, retro_chof_2497, retro_chof_2511, retro_chof_415, retro_chof_901,
Callithrix jacchus ENSCJAG00000018127 possible_ortholog 3 retrogenes
retro_cjac_1860, retro_cjac_2420, retro_cjac_918,
Erinaceus europaeus ENSEEUG00000000221 ortholog_one2one 1 retrogene
retro_eeur_544,
Echinops telfairi ENSETEG00000017693 possible_ortholog 4 retrogenes
retro_etel_1224, retro_etel_130, retro_etel_1514, retro_etel_559,
Homo sapiens ENSG00000173726 possible_ortholog 5 retrogenes
retro_hsap_1827, retro_hsap_1906, retro_hsap_3866, retro_hsap_4702, retro_hsap_796,
Gorilla gorilla ENSGGOG00000025184 possible_ortholog 5 retrogenes
retro_ggor_1395, retro_ggor_2166, retro_ggor_2606, retro_ggor_2923, retro_ggor_656,
Loxodonta africana ENSLAFG00000015499 possible_ortholog 1 retrogene
retro_lafr_436,
Microcebus murinus ENSMICG00000016325 possible_ortholog 3 retrogenes
retro_mmur_1055, retro_mmur_245, retro_mmur_989,
Myotis lucifugus ENSMLUG00000016218 ortholog_one2many 1 retrogene
retro_mluc_644,
Macaca mulatta ENSMMUG00000007136 possible_ortholog 2 retrogenes
retro_mmul_1255, retro_mmul_273,
Monodelphis domestica ENSMODG00000008452 ortholog_many2many 6 retrogenes
retro_mdom_1112, retro_mdom_1172, retro_mdom_1297, retro_mdom_1527, retro_mdom_1568, retro_mdom_838,
Mus musculus ENSMUSG00000093904 ortholog_one2many 12 retrogenes
retro_mmus_1437, retro_mmus_1669, retro_mmus_1698, retro_mmus_1990, retro_mmus_2026, retro_mmus_2141, retro_mmus_3142, retro_mmus_3311, retro_mmus_3637, retro_mmus_3655, retro_mmus_457, retro_mmus_935,
Oryctolagus cuniculus ENSOCUG00000021470 ortholog_one2one 2 retrogenes
retro_ocun_1495, retro_ocun_795,
Otolemur garnettii ENSOGAG00000032693 ortholog_one2one 2 retrogenes
retro_ogar_3167, retro_ogar_507,
Pongo abelii ENSPPYG00000000099 possible_ortholog 4 retrogenes
retro_pabe_1497, retro_pabe_1553, retro_pabe_3650, retro_pabe_708,
Pan troglodytes ENSPTRG00000002127 possible_ortholog 5 retrogenes
retro_ptro_1166, retro_ptro_1252, retro_ptro_2634, retro_ptro_3124, retro_ptro_554,
Pteropus vampyrus ENSPVAG00000015157 ortholog_one2one 1 retrogene
retro_pvam_346,
Rattus norvegicus ENSRNOG00000019980 ortholog_one2many 4 retrogenes
retro_rnor_1191, retro_rnor_1958, retro_rnor_1983, retro_rnor_2103,
Sarcophilus harrisii ENSSHAG00000015876 ortholog_one2many 3 retrogenes
retro_shar_272, retro_shar_512, retro_shar_669,
Ictidomys tridecemlineatus ENSSTOG00000027564 possible_ortholog 3 retrogenes
retro_itri_248, retro_itri_71, retro_itri_820,
Tupaia belangeri ENSTBEG00000003827 ortholog_one2many 26 retrogenes
retro_tbel_1483, retro_tbel_2215, retro_tbel_2239, retro_tbel_2240, retro_tbel_2340, retro_tbel_2348, retro_tbel_2440, retro_tbel_2472, retro_tbel_2548, retro_tbel_2610, retro_tbel_2619, retro_tbel_3000, retro_tbel_3182, retro_tbel_3204, retro_tbel_3674, retro_tbel_3687, retro_tbel_3729, retro_tbel_3808, retro_tbel_3895, retro_tbel_3949, retro_tbel_4068, retro_tbel_4096, retro_tbel_4136, retro_tbel_4596, retro_tbel_4625, retro_tbel_600,
Tursiops truncatus ENSTTRG00000002200 ortholog_one2one 4 retrogenes
retro_ttru_1114, retro_ttru_183, retro_ttru_870, retro_ttru_982,
Vicugna pacos ENSVPAG00000003980 ortholog_one2many 1 retrogene
retro_vpac_252,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_492 67.57 75.86
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2. retro_btau_533 72.07 75.86
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3. retro_btau_1025 98.99 68.28
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4. retro_btau_1147 89.26 82.76
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5. retro_btau_1357 97.93 100.00
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Download FASTA sequences of all ENSBTAG00000000562 retrocopies