Parental gene:

MCTS1, ENSEEUG00000007258

Aliases:None
Description:malignant T cell amplified sequence 1 [Source:HGNC Symbol;Acc:23357]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_1521:10283..20536(+)


>ENSEEUG00000007258
ATGGGCAAAGGAAGATTTGATGAAAAAGAAAATGTGTCCAACTGCATCCAGTTGAAAACATCAGTGATAAAGGGCATTAA
AAATCAATTGATAGAGCAATTTCCAGGTATTGAACCATGGCTTAATCAGATCATGCCTAAGAAAGATCCTGTCAAAATTG
TACGATGCCATGAACATATAGAAATCCTTACAGTAAATGGAGAATTGCTATTTTTTAGGCAAAGAGAAGGGCCTTTTTAT
CCAACCCTAAGGTTACTTCACAAATATCCTTTCATCCTGCCCCACCAGCAAGTTGATAAAGGAGCCATCAAGTTTGTACT
TAGTGGAGCAAATATCATGTGTCCAGGTTTAACATCCCCTGGAGCTAAACTTTACCCTGCTGCAGTAGACACAGTTGTTG
CAATCATGGCAGAAGGAAAACAACATGCCCTGTGTGTTGGAGTCATGAAGATGTCTGCGGAAGATATTGAGAAAGTCAAC
AAAGGAATCGGCATTGAAAATATCCATTATTTAAATGATGGGCTGTGGCATATGAAGACGTATAAATGA

Library Parental gene expression (RPM)
SRP017611_liver 34 .89 RPM
SRP017611_kidney 49 .32 RPM
SRP017611_brain 40 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000005502 ortholog_one2one 1 retrogene
retro_cpor_1411,
Echinops telfairi ENSETEG00000015462 ortholog_one2one 1 retrogene
retro_etel_19,
Homo sapiens ENSG00000232119 ortholog_one2one 1 retrogene
retro_hsap_2422,
Gorilla gorilla ENSGGOG00000009420 ortholog_one2one 1 retrogene
retro_ggor_1507,
Myotis lucifugus ENSMLUG00000015101 ortholog_one2one 1 retrogene
retro_mluc_16,
Monodelphis domestica ENSMODG00000010354 ortholog_one2one 1 retrogene
retro_mdom_203,
Mus musculus ENSMUSG00000000355 possible_ortholog 3 retrogenes
retro_mmus_2504, retro_mmus_2505, retro_mmus_69,
Oryctolagus cuniculus ENSOCUG00000014315 ortholog_one2one 1 retrogene
retro_ocun_212,
Pan troglodytes ENSPTRG00000022241 ortholog_one2one 1 retrogene
retro_ptro_1396,
Pteropus vampyrus ENSPVAG00000013249 ortholog_one2one 3 retrogenes
retro_pvam_1323, retro_pvam_645, retro_pvam_867,
Rattus norvegicus ENSRNOG00000002563 ortholog_one2one 2 retrogenes
retro_rnor_1841, retro_rnor_957,
Ictidomys tridecemlineatus ENSSTOG00000011496 possible_ortholog 2 retrogenes
retro_itri_1136, retro_itri_1468,
Tupaia belangeri ENSTBEG00000010666 ortholog_one2one 2 retrogenes
retro_tbel_1485, retro_tbel_4265,
Tarsius syrichta ENSTSYG00000001440 ortholog_one2one 1 retrogene
retro_tsyr_55,
Tursiops truncatus ENSTTRG00000007208 ortholog_one2one 1 retrogene
retro_ttru_1587,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_197 76.00 96.15
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Download FASTA sequences of all ENSEEUG00000007258 retrocopies