Parental gene:

SS18L2, ENSEEUG00000014065

Aliases:None
Description:synovial sarcoma translocation gene on chromosome 18-like 2 [Source:HGNC Symbol;Acc:15593]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_2488:7135..7985(+)


>ENSEEUG00000014065
ATGTCAGTGGCCTTCGTGCCGGACTGGATGCGAGGCAAGGCGGAAGTAAATCAGGAGACTATCCAGCGGCTCCTGGAGGA
GAATGACCAGTTGATCCGCTGCATCGTGGAGTATCAGAATAAGGGCCGAGCGCATGAGTGCGTCCAGCGGCAGGTGTTAC
ACAGAAATCTCATTTATCTGGCTTCCATTGCAGATGCCAGCCCAACCAACACTGCAAAGGAAATG

Library Parental gene expression (RPM)
SRP017611_brain 6 .28 RPM
SRP017611_kidney 4 .88 RPM
SRP017611_liver 3 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000000989 ortholog_one2one 1 retrogene
retro_acar_189,
Dipodomys ordii ENSDORG00000015005 ortholog_one2many 4 retrogenes
retro_dord_286, retro_dord_39, retro_dord_643, retro_dord_658,
Echinops telfairi ENSETEG00000007192 ortholog_one2one 2 retrogenes
retro_etel_1749, retro_etel_2074,
Loxodonta africana ENSLAFG00000021542 ortholog_one2one 2 retrogenes
retro_lafr_754, retro_lafr_92,
Myotis lucifugus ENSMLUG00000013024 possible_ortholog 1 retrogene
retro_mluc_21,
Mus musculus ENSMUSG00000032526 ortholog_one2one 3 retrogenes
retro_mmus_1247, retro_mmus_1827, retro_mmus_3284,
Ochotona princeps ENSOPRG00000015198 possible_ortholog 4 retrogenes
retro_opri_401, retro_opri_516, retro_opri_542, retro_opri_593,
Sorex araneus ENSSARG00000014056 ortholog_one2one 1 retrogene
retro_sara_465,
Tarsius syrichta ENSTSYG00000007658 ortholog_one2one 1 retrogene
retro_tsyr_1687,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_634 85.33 98.67
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Download FASTA sequences of all ENSEEUG00000014065 retrocopies