Parental gene:

RANBP1, ENSG00000099901

Aliases:RANBP1, HTF9A
Description:RAN binding protein 1 [Source:HGNC Symbol;Acc:9847]
Organism:Human (Homo sapiens)
Coordinates:22:20103460..20114878(+)


>ENSG00000099901
ATGGCGGCCGCCAAGGACACTCATGAGGACCATGATACTTCCACTGAGAATACAGACGAGTCCAACCATGACCCTCAGTT
TGAGCCAATAGTTTCTCTTCCTGAGCAAGAAATTAAAACACTGGAAGAAGATGAAGAGGAACTTTTTAAAATGCGGGCAA
AACTGTTCCGATTTGCCTCTGAGAACGATCTCCCAGAATGGAAGGAGCGAGGCACTGGTGACGTCAAGCTCCTGAAGCAC
AAGGAGAAAGGGGCCATCCGCCTCCTCATGCGGAGGGACAAGACCCTGAAGATCTGTGCCAACCACTACATCACGCCGAT
GATGGAGCTGAAGCCCAACGCAGGTAGCGACCGTGCCTGGGTCTGGAACACCCACGCTGACTTCGCCGACGAGTGCCCCA
AGCCAGAGCTGCTGGCCATCCGCTTCCTGAATGCTGAGAATGCACAGAAATTCAAAACAAAGTTTGAAGAATGCAGGAAA
GAGATCGAAGAGAGAGAAAAGAAAGCAGGATCAGGCAAAAATGATCATGCCGAAAAAGTGGCGGAAAAGCTAGAAGCTCT
CTCGGTGAAGGAGGAGACCAAGGAGGATGCTGAGGAGAAGCAATAA

Library Parental gene expression (RPM)
bodymap2_liver 29 .24 RPM
bodymap2_lung 25 .62 RPM
bodymap2_breast 21 .79 RPM
bodymap2_adipose 26 .24 RPM
bodymap2_adrenal 43 .46 RPM
bodymap2_skeletal_muscle 19 .92 RPM
bodymap2_thyroid 24 .93 RPM
bodymap2_prostate 34 .12 RPM
bodymap2_colon 28 .11 RPM
bodymap2_testis 79 .24 RPM
bodymap2_brain 34 .83 RPM
bodymap2_heart 13 .13 RPM
bodymap2_white_blood_cells 19 .61 RPM
bodymap2_lymph_node 33 .62 RPM
bodymap2_ovary 35 .93 RPM
bodymap2_kidney 28 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010749 ortholog_one2many 1 retrogene
retro_cjac_2619,
Cavia porcellus ENSCPOG00000002962 ortholog_one2many 1 retrogene
retro_cpor_1249,
Dipodomys ordii ENSDORG00000011317 ortholog_one2one 2 retrogenes
retro_dord_241, retro_dord_602,
Echinops telfairi ENSETEG00000015996 ortholog_one2one 2 retrogenes
retro_etel_1018, retro_etel_1518,
Gorilla gorilla ENSGGOG00000000784 possible_ortholog 1 retrogene
retro_ggor_170,
Macropus eugenii ENSMEUG00000016620 ortholog_one2one 8 retrogenes
retro_meug_1064, retro_meug_1553, retro_meug_1670, retro_meug_1795, retro_meug_272, retro_meug_422, retro_meug_657, retro_meug_753,
Myotis lucifugus ENSMLUG00000017535 ortholog_one2one 1 retrogene
retro_mluc_1429,
Macaca mulatta ENSMMUG00000020100 ortholog_one2one 1 retrogene
retro_mmul_1215,
Monodelphis domestica ENSMODG00000010312 ortholog_one2many 5 retrogenes
retro_mdom_1290, retro_mdom_1397, retro_mdom_1406, retro_mdom_1996, retro_mdom_288,
Mus musculus ENSMUSG00000005732 ortholog_one2one 1 retrogene
retro_mmus_3632,
Nomascus leucogenys ENSNLEG00000005684 ortholog_one2one 2 retrogenes
retro_nleu_2991, retro_nleu_934,
Otolemur garnettii ENSOGAG00000034333 ortholog_one2one 2 retrogenes
retro_ogar_1428, retro_ogar_2735,
Pongo abelii ENSPPYG00000011593 ortholog_one2one 4 retrogenes
retro_pabe_1438, retro_pabe_1470, retro_pabe_3731, retro_pabe_943,
Rattus norvegicus ENSRNOG00000001884 ortholog_one2one 4 retrogenes
retro_rnor_1817, retro_rnor_811, retro_rnor_884, retro_rnor_907,
Sarcophilus harrisii ENSSHAG00000006873 ortholog_one2many 1 retrogene
retro_shar_9,
Ictidomys tridecemlineatus ENSSTOG00000026840 ortholog_one2many 2 retrogenes
retro_itri_1579, retro_itri_345,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1727 81.82 98.50
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2. retro_hsap_4797 96.52 100.00
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Download FASTA sequences of all ENSG00000099901 retrocopies