Parental gene:

RPL34, ENSG00000109475

Aliases:RPL34, L34
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]
Organism:Human (Homo sapiens)
Coordinates:4:109541721..109551568(+)


>ENSG00000109475
ATGGTCCAGCGTTTGACATACCGACGTAGGCTTTCCTACAATACAGCCTCTAACAAAACTAGGCTGTCCCGAACCCCTGG
TAATAGAATTGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGTGTGTGCCCAGGCAGACTTC
GAGGGGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGGTGGT
TCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAAAGTGTT
GAAGGCACAAGCACAGAGTCAGAAAGCTAAATAA

Library Parental gene expression (RPM)
bodymap2_liver 186 .14 RPM
bodymap2_lung 692 .23 RPM
bodymap2_breast 451 .46 RPM
bodymap2_adipose 419 .31 RPM
bodymap2_adrenal 769 .57 RPM
bodymap2_skeletal_muscle 251 .28 RPM
bodymap2_thyroid 340 .56 RPM
bodymap2_prostate 887 .12 RPM
bodymap2_colon 750 .27 RPM
bodymap2_testis 477 .68 RPM
bodymap2_brain 183 .84 RPM
bodymap2_heart 148 .09 RPM
bodymap2_white_blood_cells 928 .04 RPM
bodymap2_lymph_node 808 .72 RPM
bodymap2_ovary 610 .59 RPM
bodymap2_kidney 272 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2one 26 retrogenes
retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Gadus morhua ENSGMOG00000009982 ortholog_one2one 1 retrogene
retro_gmor_31,
Loxodonta africana ENSLAFG00000032615 ortholog_one2one 6 retrogenes
retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii ENSMEUG00000009361 ortholog_one2one 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Myotis lucifugus ENSMLUG00000000464 possible_ortholog 4 retrogenes
retro_mluc_125, retro_mluc_1372, retro_mluc_1427, retro_mluc_1847,
Monodelphis domestica ENSMODG00000020601 ortholog_one2one 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2one 1 retrogene
retro_psin_60,
Rattus norvegicus ENSRNOG00000016387 possible_ortholog 36 retrogenes
retro_rnor_1031, retro_rnor_1083, retro_rnor_1101, retro_rnor_1172, retro_rnor_1376, retro_rnor_1550, retro_rnor_1575, retro_rnor_1630, retro_rnor_1694, retro_rnor_1695, retro_rnor_1696, retro_rnor_1775, retro_rnor_1803, retro_rnor_1844, retro_rnor_1857, retro_rnor_2029, retro_rnor_2090, retro_rnor_2095, retro_rnor_2139, retro_rnor_2230, retro_rnor_2565, retro_rnor_2578, retro_rnor_2597, retro_rnor_2621, retro_rnor_2651, retro_rnor_2794, retro_rnor_282, retro_rnor_367, retro_rnor_500, retro_rnor_575, retro_rnor_605, retro_rnor_617, retro_rnor_672, retro_rnor_848, retro_rnor_866, retro_rnor_869,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_one2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_one2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2one 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Tarsius syrichta ENSTSYG00000001781 ortholog_one2one 34 retrogenes
retro_tsyr_1071, retro_tsyr_1087, retro_tsyr_1141, retro_tsyr_1249, retro_tsyr_1253, retro_tsyr_1292, retro_tsyr_1328, retro_tsyr_1375, retro_tsyr_140, retro_tsyr_1414, retro_tsyr_1425, retro_tsyr_1514, retro_tsyr_1573, retro_tsyr_164, retro_tsyr_1702, retro_tsyr_1849, retro_tsyr_2033, retro_tsyr_2035, retro_tsyr_2094, retro_tsyr_211, retro_tsyr_2172, retro_tsyr_220, retro_tsyr_221, retro_tsyr_254, retro_tsyr_300, retro_tsyr_375, retro_tsyr_49, retro_tsyr_59, retro_tsyr_597, retro_tsyr_678, retro_tsyr_812, retro_tsyr_853, retro_tsyr_872, retro_tsyr_897,
Tursiops truncatus ENSTTRG00000003443 ortholog_one2one 6 retrogenes
retro_ttru_1667, retro_ttru_1831, retro_ttru_355, retro_ttru_710, retro_ttru_717, retro_ttru_821,
Xenopus tropicalis ENSXETG00000021095 ortholog_one2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_126 77.12 100.00
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2. retro_hsap_232 84.29 59.83
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3. retro_hsap_258 88.89 100.00
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4. retro_hsap_288 86.84 97.44
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5. retro_hsap_520 71.91 74.36
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6. retro_hsap_720 63.86 70.09
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7. retro_hsap_769 79.41 58.12
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8. retro_hsap_830 75.00 97.44
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9. retro_hsap_853 87.63 82.05
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10. retro_hsap_927 69.44 61.54
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11. retro_hsap_941 55.00 66.67
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12. retro_hsap_977 77.19 97.44
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13. retro_hsap_1245 86.21 99.15
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14. retro_hsap_1265 82.91 100.00
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15. retro_hsap_1417 66.39 100.00
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16. retro_hsap_1636 56.60 89.74
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17. retro_hsap_1735 89.77 75.21
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18. retro_hsap_1756 75.23 91.45
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19. retro_hsap_1921 70.59 100.00
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20. retro_hsap_1987 90.48 71.79
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21. retro_hsap_2041 89.74 100.00
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22. retro_hsap_2145 66.04 90.60
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23. retro_hsap_2570 68.69 84.62
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24. retro_hsap_2624 85.59 100.00
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25. retro_hsap_2695 63.89 92.31
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26. retro_hsap_2997 65.14 90.60
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27. retro_hsap_3090 63.22 74.36
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28. retro_hsap_3463 81.98 94.02
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29. retro_hsap_3550 85.47 100.00
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30. retro_hsap_3689 82.24 88.89
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31. retro_hsap_4055 65.55 100.00
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32. retro_hsap_4091 89.74 100.00
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33. retro_hsap_4314 68.57 58.97
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Download FASTA sequences of all ENSG00000109475 retrocopies