Parental gene:

Rpl34, ENSRNOG00000016387

Aliases:Rpl34, Rpl34l2
Description:60S ribosomal protein L34 [Source:RefSeq peptide;Acc:NP_001102037]
Organism:Rat (Rattus norvegicus)
Coordinates:2:254401907..254405650(-)


>ENSRNOG00000016387
ATGGTCCAGCGTTTGACATACCGTCGTAGGCTTTCCTACAATACAGCCTCTAACAAAACTAGGCTGTCTCGAACCCCTGG
CAACAGGATCGTTTACCTTTACACCAAGAAGGTCGGGAAAGCACCTAAATCCGCATGTGGCGTGTGCCCAGGCAGACTGC
GAGGGGTCCGTGCTGTGAGACCCAAAGTCCTCATGAGATTGTCCAAGACAAAGAAGCACGTCAGCAGGGCCTATGGTGGC
TCCATGTGCGCCAAGTGTGTCCGGGACAGGATCAAGCGGGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAAAGTGTT
GAAGGCACAAGCACAGAGTCAGAAAGCAAAATAA

Library Parental gene expression (RPM)
SRP017611_brain 49 .11 RPM
SRP017611_kidney 73 .69 RPM
SRP017611_liver 44 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000009074 possible_ortholog 10 retrogenes
retro_chof_1313, retro_chof_1474, retro_chof_184, retro_chof_2249, retro_chof_2258, retro_chof_2260, retro_chof_2291, retro_chof_2411, retro_chof_281, retro_chof_324,
Callithrix jacchus ENSCJAG00000015993 ortholog_one2one 4 retrogenes
retro_cjac_130, retro_cjac_293, retro_cjac_83, retro_cjac_99,
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2many 26 retrogenes
retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Echinops telfairi ENSETEG00000003715 possible_ortholog 53 retrogenes
retro_etel_106, retro_etel_107, retro_etel_1125, retro_etel_1140, retro_etel_1182, retro_etel_1187, retro_etel_1232, retro_etel_124, retro_etel_1303, retro_etel_1324, retro_etel_145, retro_etel_1483, retro_etel_1515, retro_etel_1545, retro_etel_1547, retro_etel_158, retro_etel_170, retro_etel_1745, retro_etel_1767, retro_etel_179, retro_etel_1795, retro_etel_1890, retro_etel_1967, retro_etel_1973, retro_etel_2066, retro_etel_2094, retro_etel_217, retro_etel_2191, retro_etel_273, retro_etel_274, retro_etel_299, retro_etel_327, retro_etel_344, retro_etel_362, retro_etel_380, retro_etel_388, retro_etel_416, retro_etel_418, retro_etel_429, retro_etel_464, retro_etel_494, retro_etel_533, retro_etel_726, retro_etel_74, retro_etel_756, retro_etel_759, retro_etel_774, retro_etel_863, retro_etel_870, retro_etel_914, retro_etel_927, retro_etel_938, retro_etel_974,
Felis catus ENSFCAG00000015502 ortholog_one2one 16 retrogenes
retro_fcat_1240, retro_fcat_1334, retro_fcat_1401, retro_fcat_1453, retro_fcat_1492, retro_fcat_1508, retro_fcat_1619, retro_fcat_2010, retro_fcat_368, retro_fcat_434, retro_fcat_518, retro_fcat_544, retro_fcat_640, retro_fcat_941, retro_fcat_953, retro_fcat_956,
Homo sapiens ENSG00000109475 possible_ortholog 33 retrogenes
retro_hsap_1245, retro_hsap_126, retro_hsap_1265, retro_hsap_1417, retro_hsap_1636, retro_hsap_1735, retro_hsap_1756, retro_hsap_1921, retro_hsap_1987, retro_hsap_2041, retro_hsap_2145, retro_hsap_232, retro_hsap_2570, retro_hsap_258, retro_hsap_2624, retro_hsap_2695, retro_hsap_288, retro_hsap_2997, retro_hsap_3090, retro_hsap_3463, retro_hsap_3550, retro_hsap_3689, retro_hsap_4055, retro_hsap_4091, retro_hsap_4314, retro_hsap_520, retro_hsap_720, retro_hsap_769, retro_hsap_830, retro_hsap_853, retro_hsap_927, retro_hsap_941, retro_hsap_977,
Gadus morhua ENSGMOG00000009982 ortholog_one2many 1 retrogene
retro_gmor_31,
Loxodonta africana ENSLAFG00000032615 ortholog_one2many 6 retrogenes
retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii ENSMEUG00000009361 ortholog_one2many 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Myotis lucifugus ENSMLUG00000000464 ortholog_one2one 4 retrogenes
retro_mluc_125, retro_mluc_1372, retro_mluc_1427, retro_mluc_1847,
Monodelphis domestica ENSMODG00000020601 ortholog_one2many 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Mus musculus ENSMUSG00000062006 ortholog_one2one 26 retrogenes
retro_mmus_1064, retro_mmus_1283, retro_mmus_1513, retro_mmus_1603, retro_mmus_1658, retro_mmus_2115, retro_mmus_2116, retro_mmus_215, retro_mmus_2154, retro_mmus_2266, retro_mmus_2290, retro_mmus_2476, retro_mmus_2595, retro_mmus_2695, retro_mmus_2748, retro_mmus_2903, retro_mmus_2960, retro_mmus_3041, retro_mmus_3381, retro_mmus_3524, retro_mmus_467, retro_mmus_609, retro_mmus_640, retro_mmus_817, retro_mmus_823, retro_mmus_882,
Nomascus leucogenys ENSNLEG00000012934 ortholog_one2one 20 retrogenes
retro_nleu_1219, retro_nleu_1322, retro_nleu_1495, retro_nleu_150, retro_nleu_1617, retro_nleu_1703, retro_nleu_1839, retro_nleu_1915, retro_nleu_2101, retro_nleu_2260, retro_nleu_2268, retro_nleu_2575, retro_nleu_263, retro_nleu_2911, retro_nleu_2916, retro_nleu_2966, retro_nleu_3073, retro_nleu_38, retro_nleu_553, retro_nleu_861,
Ornithorhynchus anatinus ENSOANG00000007856 possible_ortholog 1 retrogene
retro_oana_92,
Ochotona princeps ENSOPRG00000001780 possible_ortholog 11 retrogenes
retro_opri_1013, retro_opri_142, retro_opri_303, retro_opri_311, retro_opri_344, retro_opri_365, retro_opri_39, retro_opri_610, retro_opri_771, retro_opri_907, retro_opri_933,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2many 1 retrogene
retro_psin_60,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_many2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_many2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2many 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Tarsius syrichta ENSTSYG00000001781 possible_ortholog 34 retrogenes
retro_tsyr_1071, retro_tsyr_1087, retro_tsyr_1141, retro_tsyr_1249, retro_tsyr_1253, retro_tsyr_1292, retro_tsyr_1328, retro_tsyr_1375, retro_tsyr_140, retro_tsyr_1414, retro_tsyr_1425, retro_tsyr_1514, retro_tsyr_1573, retro_tsyr_164, retro_tsyr_1702, retro_tsyr_1849, retro_tsyr_2033, retro_tsyr_2035, retro_tsyr_2094, retro_tsyr_211, retro_tsyr_2172, retro_tsyr_220, retro_tsyr_221, retro_tsyr_254, retro_tsyr_300, retro_tsyr_375, retro_tsyr_49, retro_tsyr_59, retro_tsyr_597, retro_tsyr_678, retro_tsyr_812, retro_tsyr_853, retro_tsyr_872, retro_tsyr_897,
Tursiops truncatus ENSTTRG00000003443 ortholog_one2many 6 retrogenes
retro_ttru_1667, retro_ttru_1831, retro_ttru_355, retro_ttru_710, retro_ttru_717, retro_ttru_821,
Xenopus tropicalis ENSXETG00000021095 ortholog_many2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_282 94.02 100.00
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2. retro_rnor_367 98.29 100.00
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3. retro_rnor_500 79.63 90.60
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4. retro_rnor_575 84.03 100.00
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5. retro_rnor_605 69.49 100.00
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6. retro_rnor_617 75.89 94.02
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7. retro_rnor_672 88.89 99.15
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8. retro_rnor_848 91.53 99.15
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9. retro_rnor_866 75.96 86.21
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10. retro_rnor_869 91.45 100.00
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11. retro_rnor_1031 80.51 100.00
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12. retro_rnor_1083 76.72 97.44
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13. retro_rnor_1101 87.67 62.93
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14. retro_rnor_1172 67.23 100.00
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15. retro_rnor_1376 66.95 100.00
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16. retro_rnor_1550 67.52 100.00
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17. retro_rnor_1575 75.23 92.31
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18. retro_rnor_1630 83.05 100.00
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19. retro_rnor_1694 64.00 63.25
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20. retro_rnor_1695 64.00 63.25
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21. retro_rnor_1696 64.00 63.25
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22. retro_rnor_1775 83.19 100.00
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23. retro_rnor_1803 87.50 61.54
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24. retro_rnor_1844 65.71 88.03
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25. retro_rnor_1857 94.87 100.00
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26. retro_rnor_2029 91.53 100.00
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27. retro_rnor_2090 75.86 100.00
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28. retro_rnor_2095 51.30 95.73
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29. retro_rnor_2139 83.90 99.15
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30. retro_rnor_2230 81.20 100.00
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31. retro_rnor_2565 79.49 66.38
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32. retro_rnor_2578 59.82 94.87
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33. retro_rnor_2597 73.91 97.41
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34. retro_rnor_2621 57.69 88.89
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35. retro_rnor_2651 78.89 76.72
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36. retro_rnor_2794 76.27 100.00
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Download FASTA sequences of all ENSRNOG00000016387 retrocopies