Parental gene:

ENSMODG00000011916

Aliases:None
Description:None
Organism:Opossum (Monodelphis domestica)
Coordinates:5:34901117..34905637(-)


>ENSMODG00000011916
ATGGAGGTCCCGCCCCGGCTCTCGCAGGTGCCGCCGCCATTGTTTCCCTCGCCTCCCTCCGCTCTGGCCCCCCGCAACCT
CTCCCATTGGCGGCCCCGGGCTCCCCGGCAGCTTGCCCCGCTGCTGCCGTCGCTGAGTTCCGGCTCCGCCCGGCAGGGGG
CGCGCCGAGCGCCGCGCCACGTCACCGCCCCCCAGCCCTCCCGATTGGCGGGCGGGGCGTCTATAAAGGGAGGGCGCAGG
CGGCGCCCGGATCTCTTCCGCCGCCATTTTAAATCCGGCTCCATACACCGCGCTGCCGCTGCGACTCCCTCTCCGCGCCA
CCTGCCCCCGGCCGACAGCCCCGCCGCTATGGAGGACGTGAATGAGTACAGCAATATGGAGGAGTTCGCCGAAGGATCCA
AAATCAACGCCAGCAAGAATCAGCAGGACGACGGTAAAATGTTTATTGGAGGGCTAAGCTGGGATACGAGCAAGAAAGAT
CTCACTGAATACCTGTCTCGTTTTGGAGAGGTTGTAGACTGCACAATTAAAACAGATCCCGTCACGGGAAGATCGAGGGG
ATTCGGATTTGTGCTTTTCAAAGATGCTGCCAGTGTCGATAAGGTTCTGGAACTTAAAGAACACAAGTTAGATGGCAAGT
TGATAGACCCCAAAAGGGCTAAAGCTTTAAAGGGAAAGGAGCCCCCCAAAAAAGTATTTGTCGGCGGACTGAGCCCAGAT
ACGTCCGAAGAACAAATCAAGGAATATTTTGGAGCATTTGGAGAGATTGAGAATATTGAACTTCCTATGGACACAAAAAC
AAATGAAAGAAGAGGATTCTGTTTTATCACATATACAGATGAAGAACCAGTAAAGAAATTATTAGAAAACAGATATCATC
AGATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCCCAGCCCAAAGAGGTATACAGGCAGCAACAACAACAACAGAAAGGA
GGGAGGGGCGCTGCAGCTGGTGGCCGAGGTGGGACTAGGGGTCGTGGCCGAGGTCAGGGCCAAAACTGGAACCAAGGATT
TAATAACTATTATGATCAAGGATATGGAAATTACAATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCTATGGCGGAT
ATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGGTCAACAAAGCACATAT
GGCAAAGCATCCAGAGGGGGTGGTAATCACCAAAACAATTACCAACCATATTAA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015197 possible_ortholog 1 retrogene
retro_cjac_2589,
Dasypus novemcinctus ENSDNOG00000003887 ortholog_one2many 7 retrogenes
retro_dnov_1175, retro_dnov_1182, retro_dnov_144, retro_dnov_1603, retro_dnov_31, retro_dnov_723, retro_dnov_930,
Felis catus ENSFCAG00000000455 possible_ortholog 1 retrogene
retro_fcat_1568,
Macropus eugenii ENSMEUG00000011454 possible_ortholog 7 retrogenes
retro_meug_1252, retro_meug_1378, retro_meug_1491, retro_meug_1971, retro_meug_2165, retro_meug_249, retro_meug_766,
Monodelphis domestica ENSMODG00000019803 other_paralog 1 retrogene
retro_mdom_1590,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Sarcophilus harrisii ENSSHAG00000013616 ortholog_one2many 3 retrogenes
retro_shar_297, retro_shar_527, retro_shar_625,
Ictidomys tridecemlineatus ENSSTOG00000013979 possible_ortholog 1 retrogene
retro_itri_1177,
Tupaia belangeri ENSTBEG00000002817 ortholog_one2many 7 retrogenes
retro_tbel_2079, retro_tbel_2283, retro_tbel_2608, retro_tbel_2874, retro_tbel_3344, retro_tbel_4302, retro_tbel_4405,
Tursiops truncatus ENSTTRG00000001793 possible_ortholog 2 retrogenes
retro_ttru_1486, retro_ttru_744,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_546 60.53 69.54
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2. retro_mdom_981 58.82 60.19
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3. retro_mdom_1496 85.80 79.86
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4. retro_mdom_1789 72.18 58.75
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5. retro_mdom_1951 59.87 70.02
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6. retro_mdom_2017 76.47 64.99
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Download FASTA sequences of all ENSMODG00000011916 retrocopies