RetrogeneDB ID: | retro_dnov_1182 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_15917:45669..46379(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000003887 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.85 % |
Parental protein coverage: | 60.71 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | ARQHPPADSSATMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLS-WDTSKKDLTEYLSRFGEVVD |
A.Q.PP..SS.TM.DMN.YSNI..F..G.K.N.SKN.QDD.KMFIG....WDT.KKDLTE.LSRFG.V.. | |
Retrocopy | AHQQPPTNSSTTMKDMNKYSNIDDFPVGFKVNTSKNKQDDIKMFIGSMT<WDTNKKDLTEDLSRFGVVAG |
Parental | CTIKTDPVTGRSRGFG-FVLFKDAAS-VDKVLELKEHKLDGKLIDPKRAKALKGKEPP-KKVFVGGLSPD |
.T.KTD.VTGRSRGF..FVL.KDAA..VDK....KEHKLD.KLIDPKR.K.LK.K.PP.KKVFVGGLSP. | |
Retrocopy | YTSKTDIVTGRSRGFD<FVLLKDAAK<VDKDF*RKEHKLDDKLIDPKRTKSLKRKDPP<KKVFVGGLSPG |
Parental | TSEEQIKEYFGAFGEIENIEL-PMDTKTNERRGFCFIT-YTDEEPVKKLLESRYHQIGSGKCEI--KVAQ |
....Q.KEYF.AF.EIENIEL.P.......R.GFCFIT...DEEP.KK.LESRYHQIGS.K.EI..K... | |
Retrocopy | ----QSKEYF*AFKEIENIEL>PYTRTNERR-GFCFIT<IKDEEPIKKILESRYHQIGSRKSEINPKSFT |
Parental | PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQ |
...VYRQ.Q.QQ..GR.A...G..GTR..G..Q...... | |
Retrocopy | AQRVYRQHQ*QQQQGRRAVVVGQDGTRDHGWHQQSTYDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 179 .88 RPM |
SRP012922_cerebellum | 0 .00 RPM | 209 .91 RPM |
SRP012922_heart | 0 .00 RPM | 63 .58 RPM |
SRP012922_kidney | 0 .00 RPM | 105 .41 RPM |
SRP012922_liver | 0 .00 RPM | 74 .15 RPM |
SRP012922_lung | 0 .00 RPM | 201 .14 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 83 .77 RPM |
SRP012922_spleen | 0 .00 RPM | 176 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015197 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000003887 | 7 retrocopies |
retro_dnov_1175, retro_dnov_1182 , retro_dnov_144, retro_dnov_1603, retro_dnov_31, retro_dnov_723, retro_dnov_930,
|
Dasypus novemcinctus | ENSDNOG00000009228 | 7 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012928 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019022 | 3 retrocopies | |
Felis catus | ENSFCAG00000000455 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011454 | 7 retrocopies | |
Monodelphis domestica | ENSMODG00000011916 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000002501 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013616 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013979 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002817 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000001793 | 2 retrocopies |