Parental gene:

HNRNPDL, ENSFCAG00000000455

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037]
Organism:Cat (Felis catus)
Coordinates:B1:138183580..138187389(+)


>ENSFCAG00000000455
ATGGAGGTCCCGCCCCGGCTCTCCCATGTGCCGCCGCCATTGTTCCCCTCTGCTCCCGCTACTTTAGCCTCCCGCAGCCT
TTCCCATTGGCGGCCGCGGGCGCCTCGGCAGCTCGCCCCGCTCCTCCCTTCGCTCGCTCCCAGCTCCGCCCGGCAGGGGG
CGCGCCGGCCCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGAGGGGCGGCTATAAAGGGAGGGCGCAGG
CGGCGCCCGGATCTCTTCCGCCGCCATTTTAAATCCAGCTCCATACAACGCTCCGCCGCCGCTGCTGCCGCGACCCGGAC
TGCGCGCCAGCATCCCCCGGCCGACAGCTCCGCCACCATGGAGGACATGAACGAGTACAGCAACATAGAGGAATTCGCAG
AGGGATCCAAGATCAACGCGAGCAAGAATCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGC
AAGAAAGATCTGACTGAATATTTGTCTCGATTTGGGGAAGTTGTAGACTGTACAATAAAAACAGATCCAGTGACTGGAAG
ATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTTGATAAGGTTTTGGAACTGAAAGAACACAAACTGG
ATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAAGGGAAAGAACCTCCCAAAAAGGTTTTTGTGGGTGGATTG
AGCCCAGATACTTCTGAAGAACAAATTAAAGAATATTTTGGAGCCTTTGGAGAGATTGAAAATATTGAACTTCCCATGGA
TACAAAAACAAATGAAAGAAGAGGATTTTGCTTTATTACATACACAGATGAAGAGCCAGTAAAGAAATTGTTAGAAAGCA
GATATCATCAAATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGGTCTATAGGCAGCAACAGCAACAA
CAAAAAGGAGGAAGAGGTGCTGCAGCTGGTGGACGAGGTGGTACTAGGGGTCGTGGACGAGGTCAGGGCCAAAACTGGAA
CCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACAATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCT
ATGGCGGCTATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGGCCAACAG
AGCACTTACGGCAAGGCGTCTCGAGGGGGTGGCAATCACCAAAACAATTACCAGCCATACTAA

Library Parental gene expression (RPM)
SRP017611_brain 131 .76 RPM
SRP017611_kidney 82 .76 RPM
SRP017611_liver 51 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015197 ortholog_one2one 1 retrogene
retro_cjac_2589,
Dasypus novemcinctus ENSDNOG00000003887 possible_ortholog 7 retrogenes
retro_dnov_1175, retro_dnov_1182, retro_dnov_144, retro_dnov_1603, retro_dnov_31, retro_dnov_723, retro_dnov_930,
Felis catus ENSFCAG00000010150 other_paralog 9 retrogenes
retro_fcat_1574, retro_fcat_1742, retro_fcat_1867, retro_fcat_382, retro_fcat_474, retro_fcat_712, retro_fcat_781, retro_fcat_844, retro_fcat_888,
Felis catus ENSFCAG00000012146 other_paralog 5 retrogenes
retro_fcat_1231, retro_fcat_572, retro_fcat_662, retro_fcat_677, retro_fcat_842,
Felis catus ENSFCAG00000027765 within_species_paralog 1 retrogene
retro_fcat_692,
Macropus eugenii ENSMEUG00000011454 ortholog_one2one 7 retrogenes
retro_meug_1252, retro_meug_1378, retro_meug_1491, retro_meug_1971, retro_meug_2165, retro_meug_249, retro_meug_766,
Monodelphis domestica ENSMODG00000011916 possible_ortholog 6 retrogenes
retro_mdom_1496, retro_mdom_1789, retro_mdom_1951, retro_mdom_2017, retro_mdom_546, retro_mdom_981,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Ictidomys tridecemlineatus ENSSTOG00000013979 ortholog_one2one 1 retrogene
retro_itri_1177,
Tursiops truncatus ENSTTRG00000001793 ortholog_one2one 2 retrogenes
retro_ttru_1486, retro_ttru_744,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1568 82.59 58.57
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Download FASTA sequences of all ENSFCAG00000000455 retrocopies