Parental gene: | RBBP4, ENSMODG00000017415 |
| Aliases: | None |
| Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 4:426089936..426107675(+) |
>ENSMODG00000017415
ATGGCCGACAAGGAAGCAGCCTTTGATGATGCTGTAGAAGAACGAGTGATCAACGAGGAGTATAAAATATGGAAAAAAAA
TACTCCTTTTCTCTATGATTTAGTAATGACCCATGCCTTAGAATGGCCCAGCCTGACTGCACAGTGGCTTCCAGATGTAA
CAAGACCCGAAGGGAAAGATTTCAGCATTCATCGACTTGTCCTGGGTACACACACATCTGATGAACAGAATCATCTTGTG
ATAGCCAGTGTGCAGCTCCCCAATGATGATGCTCAGTTTGATGCCTCTCACTATGACAGTGAAAAAGGAGAATTTGGAGG
CTTTGGCTCAGTTAGCGGGAAAATTGAAATTGAAATCAAGATTAACCATGAAGGAGAAGTGAACAGGGCACGTTATATGC
CCCAGAATCCTTGCATCATTGCAACAAAGACTCCATCCAGTGATGTCCTTGTTTTTGACTATACCAAGCACCCTTCAAAG
CCAGACCCTTCTGGGGAGTGTAATCCAGACTTGCGCCTCCGTGGACATCAAAAAGAGGGCTATGGGTTGTCGTGGAACCC
AAATCTCAGTGGACACTTGCTTAGTGCATCAGATGATCATACCATCTGCTTGTGGGACATCAGTGCTGTTCCAAAGGAAG
GCAAAGTAGTGGATGCAAAGACCATATTCACAGGACACACAGCAGTAGTCGAAGATGTTTCTTGGCACCTCCTCCATGAA
TCTCTCTTTGGATCAGTTGCTGATGATCAGAAACTTATGATCTGGGACACACGGTCAAATAATACTTCTAAACCAAGCCA
CTCAGTGGATGCCCACACTGCCGAAGTAAATTGTCTTTCTTTTAATCCTTATAGTGAGTTCATTCTTGCCACAGGATCAG
CTGATAAGACAGTTGCATTGTGGGATCTTAGAAATCTGAAATTGAAGTTGCATTCCTTTGAGTCACATAAGGATGAAATA
TTCCAGGTTCAGTGGTCTCCTCACAATGAAACTATCTTGGCTTCCAGCGGCACTGACCGAAGGCTGAACGTCTGGGACTT
GAGTAAAATTGGAGAGGAGCAGTCCCCAGAAGATGCAGAAGATGGCCCACCAGAATTGTTGTTTATTCATGGTGGTCACA
CTGCCAAAATATCTGATTTCTCCTGGAACCCAAATGAACCATGGGTTATTTGTTCTGTATCAGAAGACAATATCATGCAA
GTCTGGCAAATGGGTAAGCTGAGAACATATACAATGATGAAGACCCTGAAGGAAGTGTGGATCCAGAGGGACAGGGGTCC
TAGACTTGTCTGCACTGGTGCTGATTTTTAG
ATGGCCGACAAGGAAGCAGCCTTTGATGATGCTGTAGAAGAACGAGTGATCAACGAGGAGTATAAAATATGGAAAAAAAA
TACTCCTTTTCTCTATGATTTAGTAATGACCCATGCCTTAGAATGGCCCAGCCTGACTGCACAGTGGCTTCCAGATGTAA
CAAGACCCGAAGGGAAAGATTTCAGCATTCATCGACTTGTCCTGGGTACACACACATCTGATGAACAGAATCATCTTGTG
ATAGCCAGTGTGCAGCTCCCCAATGATGATGCTCAGTTTGATGCCTCTCACTATGACAGTGAAAAAGGAGAATTTGGAGG
CTTTGGCTCAGTTAGCGGGAAAATTGAAATTGAAATCAAGATTAACCATGAAGGAGAAGTGAACAGGGCACGTTATATGC
CCCAGAATCCTTGCATCATTGCAACAAAGACTCCATCCAGTGATGTCCTTGTTTTTGACTATACCAAGCACCCTTCAAAG
CCAGACCCTTCTGGGGAGTGTAATCCAGACTTGCGCCTCCGTGGACATCAAAAAGAGGGCTATGGGTTGTCGTGGAACCC
AAATCTCAGTGGACACTTGCTTAGTGCATCAGATGATCATACCATCTGCTTGTGGGACATCAGTGCTGTTCCAAAGGAAG
GCAAAGTAGTGGATGCAAAGACCATATTCACAGGACACACAGCAGTAGTCGAAGATGTTTCTTGGCACCTCCTCCATGAA
TCTCTCTTTGGATCAGTTGCTGATGATCAGAAACTTATGATCTGGGACACACGGTCAAATAATACTTCTAAACCAAGCCA
CTCAGTGGATGCCCACACTGCCGAAGTAAATTGTCTTTCTTTTAATCCTTATAGTGAGTTCATTCTTGCCACAGGATCAG
CTGATAAGACAGTTGCATTGTGGGATCTTAGAAATCTGAAATTGAAGTTGCATTCCTTTGAGTCACATAAGGATGAAATA
TTCCAGGTTCAGTGGTCTCCTCACAATGAAACTATCTTGGCTTCCAGCGGCACTGACCGAAGGCTGAACGTCTGGGACTT
GAGTAAAATTGGAGAGGAGCAGTCCCCAGAAGATGCAGAAGATGGCCCACCAGAATTGTTGTTTATTCATGGTGGTCACA
CTGCCAAAATATCTGATTTCTCCTGGAACCCAAATGAACCATGGGTTATTTGTTCTGTATCAGAAGACAATATCATGCAA
GTCTGGCAAATGGGTAAGCTGAGAACATATACAATGATGAAGACCCTGAAGGAAGTGTGGATCCAGAGGGACAGGGGTCC
TAGACTTGTCTGCACTGGTGCTGATTTTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000001021 | possible_ortholog | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000015352 | possible_ortholog | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000009940 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000015214 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000011030 | ortholog_one2one | 1 retrogene | |
| Petromyzon marinus | ENSPMAG00000007189 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000021492 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000010923 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_563 | 93.44 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mdom_765 | 86.10 | 77.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mdom_1542 | 98.82 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mdom_1833 | 94.85 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mdom_1873 | 91.46 | 71.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mdom_1900 | 86.45 | 61.70 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000017415 retrocopies