RetrogeneDB ID: | retro_rnor_1270 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:51093503..51094295(+) | ||
Located in intron of: | ENSRNOG00000016046 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000021292 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rbbp4 | ||
Ensembl ID: | ENSRNOG00000021492 | ||
Aliases: | None | ||
Description: | histone-binding protein RBBP4 [Source:RefSeq peptide;Acc:NP_001101382] |
Percent Identity: | 99.62 % |
Parental protein coverage: | 62.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE |
DPSGECNPDLRL.GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE | |
Retrocopy | DPSGECNPDLRLHGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE |
Parental | DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW |
DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW | |
Retrocopy | DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW |
Parental | DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG |
DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG | |
Retrocopy | DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG |
Parental | GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQGS |
GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQGS | |
Retrocopy | GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 28 .54 RPM |
SRP017611_kidney | 0 .28 RPM | 33 .43 RPM |
SRP017611_liver | 0 .13 RPM | 14 .59 RPM |