RetrogeneDB ID: | retro_cpor_154 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:43647661..43648317(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSCPOG00000015352 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.44 % |
Parental protein coverage: | 51.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLF-GSVADDQKLMIWDTRSNNTSKPSHSVDAHTA |
DISAV.KEGKV.D.K.IFTGHTAVVEDVSWHLLHE.LF..SVADDQKLMIW.TRSNNTSK.SHSVDA.TA | |
Retrocopy | DISAVSKEGKVLDEKPIFTGHTAVVEDVSWHLLHETLF>RSVADDQKLMIWYTRSNNTSKQSHSVDANTA |
Parental | EVNCLSFNPYSEFI-LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLN |
EVNCLSFNPYSEFI..ATGSADKTVALWDLR.LKLKLHSFESHKDEI.QVQWSPHNET.LASSGTDRRLN | |
Retrocopy | EVNCLSFNPYSEFI<FATGSADKTVALWDLRKLKLKLHSFESHKDEILQVQWSPHNETTLASSGTDRRLN |
Parental | VWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV-SEDNIMQVWQMAENIYNDE |
V.DL..IGE.QS.EDA.DGPPE.LFIHGGHTAKI.DFSWNPNEPWVICSV..EDNIMQVWQMAENIYNDE | |
Retrocopy | V*DLNEIGEKQSLEDAGDGPPE-LFIHGGHTAKIPDFSWNPNEPWVICSV<TEDNIMQVWQMAENIYNDE |
Parental | DPEGSVDPEGQGS |
D.EG..DPEGQGS | |
Retrocopy | DLEGNMDPEGQGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 51 .92 RPM |
SRP017611_liver | 0 .00 RPM | 33 .60 RPM |
SRP040447_lung | 0 .00 RPM | 78 .13 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 41 .29 RPM |