Parental gene: | RBBP4, ENSCJAG00000001021 |
| Aliases: | None |
| Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:66884250..66910607(+) |
>ENSCJAG00000001021
ATGGCCGACAAGGAAGCAGCCTTCGACGACGCAGTGGAAGAGCGAGTGATCAACGAGGAGTACAAAATATGGAAAAAGAA
CACTCCTTTTCTTTATGATTTGGTGATGACCCATGCTCTGGAGTGGCCCAGCCTAACTGCCCAGTGGCTTCCAGATGTAA
CCAGACCAGAAGGGAAAGATTTCAGCATTCATCGACTTGTGCTGGGAACACACACATCGGATGAACAAAACCATCTTGTG
ATAGCCAGTGTGCAACTCCCTAATGATGATGCTCAGTTTGATGCATCACACTACGACAGTGAGAAAGGAGAATTTGGAGG
TTTTGGTTCAGTTAGTGGAAAAATTGAAATAGAAATCAAGATCAACCATGAAGGAGAAGTAAATAGGGCTCGTTATATGC
CCCAGAACCCTTGTATCATTGCAACAAAGACTCCTTCCAGTGATGTTCTTGTCTTTGACTATACAAAACATCCTTCTAAA
CCAGATCCTTCTGGAGAATGCAACCCAGATTTGCGTCTCCGTGGACATCAGAAGGAAGGCTATGGGCTTTCTTGGAACCC
AAATCTCAGTGGGCACTTGCTTAGTGCTTCAGATGACCATACCATCTGCCTGTGGGACATCAGTGCCGTTCCAAAGGAGG
GAAAAGTGGTGGATGCGAAGACCATCTTTACAGGGCATACAGCAGTTGTTGAAGATGTTTCCTGGCATCTGCTCCATGAG
TCTCTGTTTGGGTCAGTGGCTGATGATCAGAAACTTATGATTTGGGATACTCGTTCAAACAATACTTCCAAACCAAGCCA
CTCAGTTGACGCACACACTGCTGAAGTGAACTGCCTCTCTTTCAATCCTTATAGTGAGTTCATTCTTGCCACAGGATCAG
CTGACAAGACCGTTGCTTTGTGGGATCTGAGAAATTTGAAACTTAAGTTGCATTCCTTTGAATCACATAAGGATGAAATA
TTCCAGGTTCAGTGGTCGCCTCACAATGAGACTATTTTGGCTTCCAGTGGTACTGATCGCAGACTGAATGTCTGGGATTT
AAGTAAAATTGGAGAAGAACAATCCCCAGAAGATGCAGAAGACGGGCCACCAGAGTTATTGTTTATTCATGGTGGTCACA
CTGCCAAGATATCTGATTTCTCCTGGAATCCCAATGAGCCTTGGGTGATTTGTTCTGTATCAGAAGATAATATCATGCAA
GTGTGGCAAATGGCAGAGAACATTTATAACGATGAAGACCCTGAAGGAAGCGTGGATCCAGAAGGACAAGGGTCCTAG
ATGGCCGACAAGGAAGCAGCCTTCGACGACGCAGTGGAAGAGCGAGTGATCAACGAGGAGTACAAAATATGGAAAAAGAA
CACTCCTTTTCTTTATGATTTGGTGATGACCCATGCTCTGGAGTGGCCCAGCCTAACTGCCCAGTGGCTTCCAGATGTAA
CCAGACCAGAAGGGAAAGATTTCAGCATTCATCGACTTGTGCTGGGAACACACACATCGGATGAACAAAACCATCTTGTG
ATAGCCAGTGTGCAACTCCCTAATGATGATGCTCAGTTTGATGCATCACACTACGACAGTGAGAAAGGAGAATTTGGAGG
TTTTGGTTCAGTTAGTGGAAAAATTGAAATAGAAATCAAGATCAACCATGAAGGAGAAGTAAATAGGGCTCGTTATATGC
CCCAGAACCCTTGTATCATTGCAACAAAGACTCCTTCCAGTGATGTTCTTGTCTTTGACTATACAAAACATCCTTCTAAA
CCAGATCCTTCTGGAGAATGCAACCCAGATTTGCGTCTCCGTGGACATCAGAAGGAAGGCTATGGGCTTTCTTGGAACCC
AAATCTCAGTGGGCACTTGCTTAGTGCTTCAGATGACCATACCATCTGCCTGTGGGACATCAGTGCCGTTCCAAAGGAGG
GAAAAGTGGTGGATGCGAAGACCATCTTTACAGGGCATACAGCAGTTGTTGAAGATGTTTCCTGGCATCTGCTCCATGAG
TCTCTGTTTGGGTCAGTGGCTGATGATCAGAAACTTATGATTTGGGATACTCGTTCAAACAATACTTCCAAACCAAGCCA
CTCAGTTGACGCACACACTGCTGAAGTGAACTGCCTCTCTTTCAATCCTTATAGTGAGTTCATTCTTGCCACAGGATCAG
CTGACAAGACCGTTGCTTTGTGGGATCTGAGAAATTTGAAACTTAAGTTGCATTCCTTTGAATCACATAAGGATGAAATA
TTCCAGGTTCAGTGGTCGCCTCACAATGAGACTATTTTGGCTTCCAGTGGTACTGATCGCAGACTGAATGTCTGGGATTT
AAGTAAAATTGGAGAAGAACAATCCCCAGAAGATGCAGAAGACGGGCCACCAGAGTTATTGTTTATTCATGGTGGTCACA
CTGCCAAGATATCTGATTTCTCCTGGAATCCCAATGAGCCTTGGGTGATTTGTTCTGTATCAGAAGATAATATCATGCAA
GTGTGGCAAATGGCAGAGAACATTTATAACGATGAAGACCCTGAAGGAAGCGTGGATCCAGAAGGACAAGGGTCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 78 .66 RPM |
| SRP051959_skeletal_muscle | 44 .11 RPM |
| SRP051959_lymph_node | 75 .43 RPM |
| SRP051959_lung | 67 .14 RPM |
| SRP051959_liver | 56 .36 RPM |
| SRP051959_kidney | 78 .14 RPM |
| SRP051959_heart | 50 .20 RPM |
| SRP051959_colon | 58 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005904 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000010527 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000004066 | ortholog_one2one | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000015352 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000022784 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000020008 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000027017 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000162521 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011313 | possible_ortholog | 4 retrogenes | |
| Macropus eugenii | ENSMEUG00000014379 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000000749 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000009940 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017415 | possible_ortholog | 6 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015214 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000057236 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002805 | ortholog_one2one | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000011632 | possible_ortholog | 2 retrogenes | |
| Procavia capensis | ENSPCAG00000011030 | possible_ortholog | 1 retrogene | |
| Petromyzon marinus | ENSPMAG00000007189 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001588 | ortholog_one2one | 6 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000010981 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000021492 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000010923 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000012011 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000002236 | possible_ortholog | 3 retrogenes | |
| Vicugna pacos | ENSVPAG00000011876 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_244 | 98.72 | 91.76 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1157 | 88.01 | 97.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1787 | 84.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1873 | 84.89 | 52.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2557 | 97.18 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2719 | 92.71 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_2939 | 84.06 | 75.06 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001021 retrocopies