Parental gene:

Rpl7, ENSMUSG00000043716

Aliases:Rpl7, Rpl7a, Surf-3
Description:ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
Organism:Mouse (Mus musculus)
Coordinates:1:16101294..16104662(-)


>ENSMUSG00000043716
ATGGAGGCTGTTCCAGAGAAGAAAAAGAAGGTTGCCACTGTGCCAGGAACCCTTAAGAAAAAGGTTCCTGCTGGGCCAAA
AACTCTCAAGAAAAAGGTTCCCGCTGTGCCAGAAACCCTCAAGAAAAAGCGAAGGAATTTCGCAGAGTTGAAGGTGAAGC
GCCTGAGGAAGAAGTTTGCCCTGAAGACACTTCGAAAGGCAAGGAGGAAGCTCATCTATGAGAAGGCAAAGCACTATCAC
AAGGAGTACAGGCAGATGTACCGCACTGAGATTCGGATGGCCAGGATGGCAAGGAAAGCTGGCAACTTCTATGTGCCCGC
AGAACCAAAGCTGGCCTTTGTCATCAGAATTCGAGGTATCAATGGAGTAAGCCCAAAGGTTCGTAAGGTTCTGCAGCTCC
TTCGTCTTCGACAGATCTTCAATGGCACCTTTGTTAAGCTCAACAAGGCTTCAATTAACATGCTGCGGATTGTGGAGCCA
TACATTGCATGGGGGTACCCCAACCTGAAGTCAGTAAACGAGCTCATCTACAAGCGAGGCTACGGCAAAATCAACAAGAA
GCGGATTGCCTTGACAGATAATTCCTTGATTGCTCGGTCTCTTGGTAAGTTTGGCATCATCTGCATGGAGGATCTAATTC
ATGAGATCTATACAGTCGGGAAACGCTTCAAGGAAGCAAATAACTTCCTGTGGCCCTTCAAGTTATCTTCCCCACGAGGT
GGGATGAAGAAAAAGACAACTCACTTTGTAGAAGGTGGAGATGCTGGCAACAGGGAAGACCAGATAAACAGGCTTATTAG
ACGGATGAACTAA

Library Parental gene expression (RPM)
SRP007412_brain 108 .26 RPM
SRP007412_cerebellum 87 .10 RPM
SRP007412_heart 118 .08 RPM
SRP007412_kidney 156 .36 RPM
SRP007412_liver 136 .76 RPM
SRP007412_testis 77 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020139 possible_ortholog 22 retrogenes
retro_btau_1088, retro_btau_1231, retro_btau_1367, retro_btau_1381, retro_btau_1422, retro_btau_1434, retro_btau_1468, retro_btau_1548, retro_btau_1559, retro_btau_1616, retro_btau_1627, retro_btau_1784, retro_btau_1814, retro_btau_304, retro_btau_426, retro_btau_622, retro_btau_668, retro_btau_730, retro_btau_750, retro_btau_758, retro_btau_863, retro_btau_879,
Callithrix jacchus ENSCJAG00000007686 possible_ortholog 1 retrogene
retro_cjac_105,
Equus caballus ENSECAG00000009188 ortholog_one2many 1 retrogene
retro_ecab_35,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2one 1 retrogene
retro_lcha_63,
Macropus eugenii ENSMEUG00000016319 ortholog_one2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Macaca mulatta ENSMMUG00000005141 possible_ortholog 1 retrogene
retro_mmul_129,
Monodelphis domestica ENSMODG00000007136 ortholog_one2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Mus musculus ENSMUSG00000063888 within_species_paralog 4 retrogenes
retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Otolemur garnettii ENSOGAG00000003903 possible_ortholog 2 retrogenes
retro_ogar_15, retro_ogar_225,
Rattus norvegicus ENSRNOG00000006992 ortholog_one2many 27 retrogenes
retro_rnor_1018, retro_rnor_1174, retro_rnor_1222, retro_rnor_1233, retro_rnor_1307, retro_rnor_1388, retro_rnor_1466, retro_rnor_1580, retro_rnor_1745, retro_rnor_1916, retro_rnor_1944, retro_rnor_2025, retro_rnor_2028, retro_rnor_2100, retro_rnor_2247, retro_rnor_2304, retro_rnor_2347, retro_rnor_2531, retro_rnor_2715, retro_rnor_2765, retro_rnor_2814, retro_rnor_2824, retro_rnor_530, retro_rnor_666, retro_rnor_911, retro_rnor_929, retro_rnor_977,
Tupaia belangeri ENSTBEG00000002301 ortholog_one2many 1 retrogene
retro_tbel_2042,
Tarsius syrichta ENSTSYG00000006100 ortholog_one2one 25 retrogenes
retro_tsyr_1149, retro_tsyr_1200, retro_tsyr_1293, retro_tsyr_1297, retro_tsyr_1403, retro_tsyr_1598, retro_tsyr_1633, retro_tsyr_1850, retro_tsyr_1891, retro_tsyr_191, retro_tsyr_2109, retro_tsyr_2130, retro_tsyr_344, retro_tsyr_421, retro_tsyr_433, retro_tsyr_521, retro_tsyr_589, retro_tsyr_601, retro_tsyr_651, retro_tsyr_724, retro_tsyr_779, retro_tsyr_877, retro_tsyr_930, retro_tsyr_953, retro_tsyr_992,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_561 71.07 89.26
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2. retro_mmus_595 90.23 64.07
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3. retro_mmus_708 98.24 84.07
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4. retro_mmus_1232 76.55 51.97
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5. retro_mmus_1345 94.27 84.07
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6. retro_mmus_1631 96.26 68.89
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7. retro_mmus_2549 93.86 84.07
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8. retro_mmus_2562 93.83 83.70
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9. retro_mmus_2798 79.25 89.26
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10. retro_mmus_3259 77.54 69.26
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11. retro_mmus_3305 93.49 62.22
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12. retro_mmus_3440 95.63 67.41
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13. retro_mmus_3547 85.14 54.81
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14. retro_mmus_3552 74.49 89.26
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15. retro_mmus_3685 82.59 82.59
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Download FASTA sequences of all ENSMUSG00000043716 retrocopies