RetrogeneDB ID: | retro_rnor_911 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:39486145..39486790(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000017697 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 81.74 % |
Parental protein coverage: | 83.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | KKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKAR-RKLIYEKAKHYHKEYRQMYRTEI-RMARM |
KKKKV..V.ET.KKK.RNFAELKVK.LRKKFALKTL.KA..RKLIYEKAKH.HKE..QM..TEI..MAR. | |
Retrocopy | KKKKVAIVSETFKKKWRNFAELKVKHLRKKFALKTLQKAT<RKLIYEKAKHSHKECSQMDQTEI<SMART |
Parental | ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRL-RQIFNGTFVKLNKASVNMLRIVEPYIAWG |
ARKAGNFYV.AEPKLAFVIRI.GI.GVSPKV.KVLQLL.L.RQIF.GT.VKLNKAS.NMLRIVEPYI.W. | |
Retrocopy | ARKAGNFYVLAEPKLAFVIRIQGISGVSPKVCKVLQLLVL<RQIFIGTVVKLNKASINMLRIVEPYIVWE |
Parental | YPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKL |
YPNLKSV.ELIYKRGYGKINKK.IALTDNSL.AR.LGK.GIICMEDLI.E.YTVGKRFKEA.NFLW.FKL | |
Retrocopy | YPNLKSVKELIYKRGYGKINKKWIALTDNSLIARTLGKVGIICMEDLIYEVYTVGKRFKEASNFLWLFKL |
Parental | SSPRGGMKK |
SS..G.MKK | |
Retrocopy | SSTPGRMKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .00 RPM | 183 .42 RPM |