Parental gene:

Rpl18a, ENSMUSG00000045128

Aliases:Rpl18a, 2510019J09Rik
Description:ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
Organism:Mouse (Mus musculus)
Coordinates:8:70894721..70897443(-)


>ENSMUSG00000045128
ATGAAGGCCTCGGGCACGCTTCGGGAGTACAAGGTGGTGGGGCGCTGCTTGCCAACCCCAAAATGCCACACACCACCACT
GTACCGTATGCGAATCTTTGCACCCAACCATGTGGTGGCCAAGTCCCGCTTCTGGTACTTTGTGTCACAGCTGAAGAAGA
TGAAGAAGTCATCCGGGGAAATTGTGTACTGCGGACAGGTGTTTGAGAAGTCACCCCTGCGTGTGAAGAACTTTGGCATC
TGGCTGCGCTATGACTCCCGCAGTGGCACACACAACATGTATCGGGAGTACAGGGACCTGACCACTGCTGGTGCAGTCAC
ACAGTGCTACCGAGACATGGGTGCCCGACACCGTGCCCGTGCCCACTCCATCCAGATCATGAAGGTGGAAGAGATTGCAG
CTGGCAAGTGCCGCCGGCCAGCTGTCAAGCAGTTCCACGACTCCAAGATCAAATTCCCACTGCCCCACCGTGTGTTGCGG
CGCCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG

Library Parental gene expression (RPM)
SRP007412_brain 38 .62 RPM
SRP007412_cerebellum 40 .86 RPM
SRP007412_heart 83 .68 RPM
SRP007412_kidney 75 .27 RPM
SRP007412_liver 65 .79 RPM
SRP007412_testis 43 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003125 ortholog_one2many 1 retrogene
retro_acar_86,
Bos taurus ENSBTAG00000015831 ortholog_one2one 5 retrogenes
retro_btau_145, retro_btau_1586, retro_btau_842, retro_btau_917, retro_btau_922,
Canis familiaris ENSCAFG00000015122 possible_ortholog 1 retrogene
retro_cfam_231,
Callithrix jacchus ENSCJAG00000014006 ortholog_one2one 7 retrogenes
retro_cjac_1628, retro_cjac_2814, retro_cjac_3192, retro_cjac_3906, retro_cjac_4134, retro_cjac_441, retro_cjac_642,
Cavia porcellus ENSCPOG00000015205 possible_ortholog 1 retrogene
retro_cpor_1478,
Equus caballus ENSECAG00000015258 possible_ortholog 1 retrogene
retro_ecab_745,
Homo sapiens ENSG00000105640 ortholog_one2one 11 retrogenes
retro_hsap_1053, retro_hsap_128, retro_hsap_135, retro_hsap_1610, retro_hsap_1961, retro_hsap_2254, retro_hsap_2676, retro_hsap_2776, retro_hsap_4129, retro_hsap_4734, retro_hsap_4776,
Gorilla gorilla ENSGGOG00000002870 ortholog_one2one 8 retrogenes
retro_ggor_1215, retro_ggor_1680, retro_ggor_1868, retro_ggor_1933, retro_ggor_195, retro_ggor_227, retro_ggor_2775, retro_ggor_2940,
Macropus eugenii ENSMEUG00000003228 ortholog_many2many 2 retrogenes
retro_meug_36, retro_meug_49,
Myotis lucifugus ENSMLUG00000006701 ortholog_one2one 4 retrogenes
retro_mluc_1671, retro_mluc_1893, retro_mluc_1978, retro_mluc_2191,
Macaca mulatta ENSMMUG00000028844 possible_ortholog 6 retrogenes
retro_mmul_1416, retro_mmul_1591, retro_mmul_2233, retro_mmul_2547, retro_mmul_292, retro_mmul_364,
Monodelphis domestica ENSMODG00000019167 ortholog_one2many 2 retrogenes
retro_mdom_349, retro_mdom_680,
Mustela putorius furo ENSMPUG00000015786 possible_ortholog 4 retrogenes
retro_mputfur_1007, retro_mputfur_1189, retro_mputfur_1574, retro_mputfur_457,
Nomascus leucogenys ENSNLEG00000005889 ortholog_one2one 7 retrogenes
retro_nleu_1087, retro_nleu_1180, retro_nleu_1940, retro_nleu_2261, retro_nleu_2605, retro_nleu_2672, retro_nleu_680,
Otolemur garnettii ENSOGAG00000031828 ortholog_one2one 4 retrogenes
retro_ogar_1016, retro_ogar_1891, retro_ogar_2226, retro_ogar_2564,
Pongo abelii ENSPPYG00000009725 ortholog_one2one 10 retrogenes
retro_pabe_1200, retro_pabe_1319, retro_pabe_1620, retro_pabe_2239, retro_pabe_2302, retro_pabe_3680, retro_pabe_3717, retro_pabe_3802, retro_pabe_482, retro_pabe_487,
Pan troglodytes ENSPTRG00000010686 ortholog_one2one 3 retrogenes
retro_ptro_1078, retro_ptro_1803, retro_ptro_27,
Rattus norvegicus ENSRNOG00000018795 ortholog_one2one 6 retrogenes
retro_rnor_108, retro_rnor_1655, retro_rnor_2279, retro_rnor_2362, retro_rnor_2821, retro_rnor_888,
Sarcophilus harrisii ENSSHAG00000000406 ortholog_one2many 3 retrogenes
retro_shar_435, retro_shar_474, retro_shar_706,
Ictidomys tridecemlineatus ENSSTOG00000007788 ortholog_one2one 1 retrogene
retro_itri_694,
Tupaia belangeri ENSTBEG00000010488 possible_ortholog 4 retrogenes
retro_tbel_2865, retro_tbel_2925, retro_tbel_635, retro_tbel_919,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_260 91.23 96.59
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_mmus_326 97.71 99.43
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_mmus_346 98.86 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_mmus_937 97.16 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_mmus_951 80.00 90.91
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_mmus_1606 89.27 100.00
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_mmus_2910 86.36 100.00
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_mmus_2924 74.23 92.61
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMUSG00000045128 retrocopies