Parental gene: | Rpl18a, ENSMUSG00000045128 |
| Aliases: | Rpl18a, 2510019J09Rik |
| Description: | ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 8:70894721..70897443(-) |
>ENSMUSG00000045128
ATGAAGGCCTCGGGCACGCTTCGGGAGTACAAGGTGGTGGGGCGCTGCTTGCCAACCCCAAAATGCCACACACCACCACT
GTACCGTATGCGAATCTTTGCACCCAACCATGTGGTGGCCAAGTCCCGCTTCTGGTACTTTGTGTCACAGCTGAAGAAGA
TGAAGAAGTCATCCGGGGAAATTGTGTACTGCGGACAGGTGTTTGAGAAGTCACCCCTGCGTGTGAAGAACTTTGGCATC
TGGCTGCGCTATGACTCCCGCAGTGGCACACACAACATGTATCGGGAGTACAGGGACCTGACCACTGCTGGTGCAGTCAC
ACAGTGCTACCGAGACATGGGTGCCCGACACCGTGCCCGTGCCCACTCCATCCAGATCATGAAGGTGGAAGAGATTGCAG
CTGGCAAGTGCCGCCGGCCAGCTGTCAAGCAGTTCCACGACTCCAAGATCAAATTCCCACTGCCCCACCGTGTGTTGCGG
CGCCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG
ATGAAGGCCTCGGGCACGCTTCGGGAGTACAAGGTGGTGGGGCGCTGCTTGCCAACCCCAAAATGCCACACACCACCACT
GTACCGTATGCGAATCTTTGCACCCAACCATGTGGTGGCCAAGTCCCGCTTCTGGTACTTTGTGTCACAGCTGAAGAAGA
TGAAGAAGTCATCCGGGGAAATTGTGTACTGCGGACAGGTGTTTGAGAAGTCACCCCTGCGTGTGAAGAACTTTGGCATC
TGGCTGCGCTATGACTCCCGCAGTGGCACACACAACATGTATCGGGAGTACAGGGACCTGACCACTGCTGGTGCAGTCAC
ACAGTGCTACCGAGACATGGGTGCCCGACACCGTGCCCGTGCCCACTCCATCCAGATCATGAAGGTGGAAGAGATTGCAG
CTGGCAAGTGCCGCCGGCCAGCTGTCAAGCAGTTCCACGACTCCAAGATCAAATTCCCACTGCCCCACCGTGTGTTGCGG
CGCCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 38 .62 RPM |
| SRP007412_cerebellum | 40 .86 RPM |
| SRP007412_heart | 83 .68 RPM |
| SRP007412_kidney | 75 .27 RPM |
| SRP007412_liver | 65 .79 RPM |
| SRP007412_testis | 43 .31 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000003125 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000015831 | ortholog_one2one | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000015122 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014006 | ortholog_one2one | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000015205 | possible_ortholog | 1 retrogene | |
| Equus caballus | ENSECAG00000015258 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000105640 | ortholog_one2one | 11 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002870 | ortholog_one2one | 8 retrogenes | |
| Macropus eugenii | ENSMEUG00000003228 | ortholog_many2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000006701 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000028844 | possible_ortholog | 6 retrogenes | |
| Monodelphis domestica | ENSMODG00000019167 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015786 | possible_ortholog | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005889 | ortholog_one2one | 7 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031828 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000009725 | ortholog_one2one | 10 retrogenes | |
| Pan troglodytes | ENSPTRG00000010686 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000018795 | ortholog_one2one | 6 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000000406 | ortholog_one2many | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000007788 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000010488 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_260 | 91.23 | 96.59 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_326 | 97.71 | 99.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_346 | 98.86 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_937 | 97.16 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_951 | 80.00 | 90.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmus_1606 | 89.27 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_mmus_2910 | 86.36 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_mmus_2924 | 74.23 | 92.61 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000045128 retrocopies