Parental gene: | Rpl18a, ENSRNOG00000018795 |
| Aliases: | None |
| Description: | 60S ribosomal protein L18a [Source:UniProtKB/Swiss-Prot;Acc:P62718] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 16:20150820..20152827(+) |
>ENSRNOG00000018795
ATGAAGGCGTCGGGCACGCTTCGGGAGTACAAGGTGGTGGGGCGTTGCTTGCCAACCCCAAAATGCCACACACCGCCACT
GTACCGAATGCGAATCTTTGCACCCAACCATGTGGTGGCCAAGTCCCGCTTCTGGTACTTTGTGTCGCAGCTGAAGAAGA
TGAAGAAGTCATCCGGGGAAATTGTGTACTGTGGGCAGGTGTTTGAGAAGTCACCCCTGCGTGTGAAGAACTTCGGCATC
TGGCTGCGCTATGATTCCCGAAGTGGCACTCACAACATGTACCGAGAGTACCGGGACCTGACCACTGCCGGCGCGGTCAC
ACAGTGCTACCGAGACATGGGTGCCCGACACCGTGCCCGTGCGCACTCCATCCAGATCATGAAGGTGGAAGAGATTGCAG
CTGGCAAGTGCCGCCGGCCAGCTGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCATTGCCCCACCGTGTGTTGCGG
CGCCAGCACAAACCACGCTTCACCACCAAGAGGCCAAACACCTTCTTCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 106 .41 RPM |
| SRP017611_kidney | 128 .40 RPM |
| SRP017611_liver | 86 .87 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000003125 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000015831 | ortholog_one2one | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000015122 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014006 | ortholog_one2one | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000015205 | possible_ortholog | 1 retrogene | |
| Equus caballus | ENSECAG00000015258 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000105640 | ortholog_one2one | 11 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002870 | ortholog_one2one | 8 retrogenes | |
| Macropus eugenii | ENSMEUG00000003228 | ortholog_many2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000006701 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000028844 | possible_ortholog | 6 retrogenes | |
| Monodelphis domestica | ENSMODG00000019167 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015786 | possible_ortholog | 4 retrogenes | |
| Mus musculus | ENSMUSG00000045128 | ortholog_one2one | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005889 | ortholog_one2one | 7 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031828 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000009725 | ortholog_one2one | 10 retrogenes | |
| Pan troglodytes | ENSPTRG00000010686 | ortholog_one2one | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000000406 | ortholog_one2many | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000007788 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000010488 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_108 | 94.22 | 98.30 | Please wait, loading  |
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| 2. | retro_rnor_888 | 75.62 | 89.20 | Please wait, loading |
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| 3. | retro_rnor_1655 | 79.87 | 89.77 | Please wait, loading |
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| 4. | retro_rnor_2279 | 77.62 | 78.41 | Please wait, loading |
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| 5. | retro_rnor_2362 | 83.70 | 76.14 | Please wait, loading |
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| 6. | retro_rnor_2821 | 58.33 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSRNOG00000018795 retrocopies