Parental gene: | PABPC1, ENSNLEG00000003142 |
| Aliases: | None |
| Description: | None |
| Organism: | Gibbon (Nomascus leucogenys) |
| Coordinates: | GL397267.1:14501729..14554987(-) |
>ENSNLEG00000003142
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCT
ACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAA
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATCTGGA
CAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATG
AAAATGGTTCCAAGGGCTATGGATTTGTACACTTTGAGACGCAGGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGA
ATGCTCCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCCAGGGC
AAAAGAATTCACTAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGT
TTGGGCCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCACAGAAAGCTGTGGATGAGATGAACGGAAAGGAGCTCAATGGAAAACAAATTTATGTTGGTCGAGCTCA
GAAAAAGGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGGTG
TTAATCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCATTTGGTACAATC
ACTAGTGCAAAGGTTATGATGGAGGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCAC
TAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTGCCCAACCCTGTAATCAACCCCTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATATGCCCGGTGCTA
TCCGCCCAGCTGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAG
CGTGTTGCTAACACATCAACACAGACAATGGGTCCACGTCCTGCAGCTGCAGCTGCTGCAGCTACTCCTGCTGTCCGCAC
CGTTCCACAGTATAAGTATGCTGCAGGAGTTCGCAATCCTCAGCAACATCTTAATGCACAGCCACAAGTTACAATGCAAC
AGCCTGCTGTTCATGTACAAGGTCAGGAACCTTTGACTGCTTCCATGTTGGCATCTGCCCCTCCTCAAGAGCAAAAGCAA
ATGTTGGGTGAACGGCTGTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGA
GATTGATAATTCAGAACTTCTTCATATGCTCGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTAC
TACAAGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAACAGTGCCACTGGTGTTCCAACCGTTTAA
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCT
ACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAA
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATCTGGA
CAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATG
AAAATGGTTCCAAGGGCTATGGATTTGTACACTTTGAGACGCAGGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGA
ATGCTCCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCCAGGGC
AAAAGAATTCACTAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGT
TTGGGCCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCACAGAAAGCTGTGGATGAGATGAACGGAAAGGAGCTCAATGGAAAACAAATTTATGTTGGTCGAGCTCA
GAAAAAGGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGGTG
TTAATCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCATTTGGTACAATC
ACTAGTGCAAAGGTTATGATGGAGGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCAC
TAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTGCCCAACCCTGTAATCAACCCCTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATATGCCCGGTGCTA
TCCGCCCAGCTGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAG
CGTGTTGCTAACACATCAACACAGACAATGGGTCCACGTCCTGCAGCTGCAGCTGCTGCAGCTACTCCTGCTGTCCGCAC
CGTTCCACAGTATAAGTATGCTGCAGGAGTTCGCAATCCTCAGCAACATCTTAATGCACAGCCACAAGTTACAATGCAAC
AGCCTGCTGTTCATGTACAAGGTCAGGAACCTTTGACTGCTTCCATGTTGGCATCTGCCCCTCCTCAAGAGCAAAAGCAA
ATGTTGGGTGAACGGCTGTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGA
GATTGATAATTCAGAACTTCTTCATATGCTCGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTAC
TACAAGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAACAGTGCCACTGGTGTTCCAACCGTTTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000015833 | ortholog_one2one | 5 retrogenes | |
| Homo sapiens | ENSG00000070756 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017786 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000006222 | ortholog_one2many | 4 retrogenes | |
| Mus musculus | ENSMUSG00000022283 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011928 | within_species_paralog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000004354 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018790 | possible_ortholog | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000016640 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000008639 | ortholog_one2one | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000011267 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000006063 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004689 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000003865 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_nleu_221 | 91.33 | 61.48 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_nleu_611 | 85.69 | 89.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_nleu_2412 | 91.98 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSNLEG00000003142 retrocopies