Parental gene:

PABPC4, ENSNLEG00000011928

Aliases:None
Description:None
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397355.1:4415290..4431408(-)


>ENSNLEG00000011928
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGCGATCTGCATTCGGACGTCACCGAGGCCATGCT
GTACGAAAAGTTCAGCCCCGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGCT
ATGCCTACGTCAACTTCCAGCAGCCGGCCGACGCTGAGCGGGCTTTGGACACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGCATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGCAACATACTATCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTATTTGTGGGCAGATTTAAGTCTCGCAAAGAGCGGGAAGCTGAGCTTGGAGCCAAAGC
CAAGGAATTCACCAATGTTTATATCAAAAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTATTCAGTCAGT
TTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATAAGTGGTAAAATCATATTTGTAGGCCGTGCACA
AAAGAAAGTAGAACGGCAGGCAGAGTTAAAACGGAAATTTGAACAGTTGAAACAGGAGAGAATTAGTCGATATCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGACACTATTGATGATGAGAAATTAAGGAAAGAATTTTCTCCTTTTGGATCAATT
ACCAGTGCTAAGGTAATGCTGGAGGATGGAAGAAGCAAAGGGTTTGGCTTCGTCTGCTTCTCGTCTCCTGAAGAAGCAAC
CAAAGCAGTCACTGAGATGAATGGACGCATTGTGGGCTCCAAGCCACTATATGTTGCCCTGGCCCAGAGGAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTATATGCAACGAGTGGCTGGAATGAGAGCACTTCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCGGGTGGCTACTTTGTGCCAGCAGTCCCACAGGCTCAGGGAAGGCCTCCATATTATACACCTAACCA
GTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACC
ACTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGCGTTCCCACAGCTGTGCAGAACTTAGCGCCACGCGCTGCTGTTGCCGCTGCTGCTCCCC
GGGCTGTTGCCCCCTACAAATACGCCTCCAGTGTCCGCAGCCCTCATCCTGCCATACAGCCTCTGCAGGCACCCCAGCCT
GCGGTCCATGTGCAGGGGCAGGAGCCACTGACTGCCTCCATGCTGGCTGCAGCACCCCCCCAGGAACAGAAGCAGATGCT
GGGAGAACGCTTGTTCCCACTCATCCAAACAATGCATTCAAACCTGGCTGGGAAGATCACGGGAATGTTGCTGGAGATAG
ACAACTCTGAGCTGCTGCACATGTTAGAGTCCCCCGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTAGCAGTTCTACAG
GCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011535 possible_ortholog 2 retrogenes
retro_amel_107, retro_amel_676,
Callithrix jacchus ENSCJAG00000002512 ortholog_one2one 3 retrogenes
retro_cjac_214, retro_cjac_2722, retro_cjac_284,
Cavia porcellus ENSCPOG00000009552 ortholog_one2one 2 retrogenes
retro_cpor_1330, retro_cpor_77,
Felis catus ENSFCAG00000015254 possible_ortholog 2 retrogenes
retro_fcat_116, retro_fcat_545,
Homo sapiens ENSG00000090621 ortholog_one2one 2 retrogenes
retro_hsap_109, retro_hsap_74,
Gorilla gorilla ENSGGOG00000004002 ortholog_one2one 3 retrogenes
retro_ggor_2127, retro_ggor_87, retro_ggor_916,
Microcebus murinus ENSMICG00000016633 ortholog_one2many 1 retrogene
retro_mmur_675,
Macaca mulatta ENSMMUG00000007497 ortholog_one2one 1 retrogene
retro_mmul_178,
Monodelphis domestica ENSMODG00000017657 ortholog_one2many 2 retrogenes
retro_mdom_1090, retro_mdom_1805,
Mustela putorius furo ENSMPUG00000014414 possible_ortholog 2 retrogenes
retro_mputfur_152, retro_mputfur_546,
Mus musculus ENSMUSG00000011257 ortholog_one2many 7 retrogenes
retro_mmus_2006, retro_mmus_2326, retro_mmus_2327, retro_mmus_798, retro_mmus_801, retro_mmus_803, retro_mmus_805,
Nomascus leucogenys ENSNLEG00000003142 within_species_paralog 3 retrogenes
retro_nleu_221, retro_nleu_2412, retro_nleu_611,
Oryctolagus cuniculus ENSOCUG00000000562 ortholog_one2one 2 retrogenes
retro_ocun_153, retro_ocun_792,
Otolemur garnettii ENSOGAG00000004067 ortholog_one2one 1 retrogene
retro_ogar_71,
Ochotona princeps ENSOPRG00000011984 ortholog_one2one 1 retrogene
retro_opri_1133,
Pongo abelii ENSPPYG00000001506 ortholog_one2one 2 retrogenes
retro_pabe_190, retro_pabe_2563,
Pan troglodytes ENSPTRG00000000573 ortholog_one2one 3 retrogenes
retro_ptro_101, retro_ptro_2093, retro_ptro_8,
Rattus norvegicus ENSRNOG00000015642 ortholog_one2many 2 retrogenes
retro_rnor_175, retro_rnor_92,
Sarcophilus harrisii ENSSHAG00000018139 ortholog_one2one 1 retrogene
retro_shar_823,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_nleu_62 66.85 55.15
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2. retro_nleu_1517 71.29 62.12
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Download FASTA sequences of all ENSNLEG00000011928 retrocopies