Parental gene:

RPL4, ENSOCUG00000008794

Aliases:None
Description:ribosomal protein L4 [Source:HGNC Symbol;Acc:10353]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:17:5896993..5901066(+)


>ENSOCUG00000008794
GCCGCCGGGAGGAGAGGAGCGTGGCTCTCACCTCTCCCCGCCATGGCGTGTGCTCGTCCACTCATATCGGTGTACTCCGA
GAAGGGGGAGTCGTCCGGCAAAAATGTGACTTTGCCCGCCGTGTTCAAGGCTCCCATCCGGCCAGACATCGTGAACTTCG
TGCACACCAACCTGCGCAAGAACAACAGGCAGCCCTATGCCGTCAGTGAGCTGGCAGGTCACCAGACCAGTGCTGAGTCG
TGGGGTACTGGCAGAGCTGTGGCGCGAATTCCCAGAGTGCGAGGTGGCGGGACGCACCGATCCGGCCAGGGTGCCTTTGG
GAATATGTGCCGAGGAGGCCGCATGTTCGCACCAACCAAAACCTGGCGCCGTTGGCACCGGCGAGTGAACACGACCCAGA
AGCGGTACGCCATCTGCTCTGCCCTGGCTGCGTCGGCCTTGCCAGCGCTGGTCATGTCTAAAGGTCATCGTATTGAGGAA
GTGCCGGAGCTTCCTCTGGTGGTCGAAGATAAGGTTGAAGGCTACAAGAAGACCAAGGAGGCAGTTCTGCTGCTTAAGAA
ACTCAAGGCCTGGAATGACATCAAGAAGGTGTACGCCTCTCAGCGGATGAGGGCTGGCAAGGGCAAAATGAGAAACCGCC
GGAGGATCCAGCGCAGGGGCCCCTGCGTCATCTACAATGAGGACAACGGCATCGTCAAGGCCTTCCGGAACATCCCTGGG
ATCACTCTGCTCAACGTGACCAAGCTGAACATCCTGAAGCTCGCGCCCGGCGGGCACGTGGGGCGCTTCTGCATCTGGAC
GGAGAGTGCCTTCCGGAAGCTGGACGACTTGTACGGCACTTGGCGTAAAGCCGCGTCCCTCAAGAGCAACTACAACCTTC
CCATGCACAAGATGCTCAATACAGACCTCAGCAGAATCTTGAAGAGCCCAGAGATCCAGAGAGCGCTCCGAGCACCACGC
AAGAAGATCCATCGCCGCGTCCTGAAGAAGAACCCGCTGAAGAACCTGAGGATCATGTTGAAGCTGAACCCGTACGCGAA
GACCATGCGGCGCAACACCATCCTGCGGCAGGCCCGGAACCACAAGCTCCGCGTGGAGAGGGCGGCCGCGGCACTAGCAG
CCAAATCTGACCCGAAGGAGGCGCCAGCCAAGAAGAAGCCTGTGGTGGGGAAGAAG

Library Parental gene expression (RPM)
SRP017611_brain 499 .23 RPM
SRP017611_kidney 744 .97 RPM
SRP017611_liver 394 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005211 possible_ortholog 2 retrogenes
retro_btau_101, retro_btau_610,
Canis familiaris ENSCAFG00000017309 possible_ortholog 1 retrogene
retro_cfam_72,
Callithrix jacchus ENSCJAG00000007491 possible_ortholog 2 retrogenes
retro_cjac_251, retro_cjac_945,
Cavia porcellus ENSCPOG00000003055 ortholog_one2one 1 retrogene
retro_cpor_370,
Echinops telfairi ENSETEG00000000337 possible_ortholog 3 retrogenes
retro_etel_1876, retro_etel_2195, retro_etel_226,
Felis catus ENSFCAG00000012293 possible_ortholog 4 retrogenes
retro_fcat_1136, retro_fcat_189, retro_fcat_505, retro_fcat_567,
Gorilla gorilla ENSGGOG00000003695 possible_ortholog 4 retrogenes
retro_ggor_1023, retro_ggor_2008, retro_ggor_2831, retro_ggor_304,
Myotis lucifugus ENSMLUG00000011809 possible_ortholog 2 retrogenes
retro_mluc_121, retro_mluc_198,
Macaca mulatta ENSMMUG00000016844 possible_ortholog 2 retrogenes
retro_mmul_2160, retro_mmul_649,
Monodelphis domestica ENSMODG00000009657 ortholog_one2one 2 retrogenes
retro_mdom_656, retro_mdom_944,
Mustela putorius furo ENSMPUG00000000337 possible_ortholog 3 retrogenes
retro_mputfur_1205, retro_mputfur_411, retro_mputfur_570,
Mus musculus ENSMUSG00000032399 ortholog_one2one 2 retrogenes
retro_mmus_2863, retro_mmus_495,
Nomascus leucogenys ENSNLEG00000012938 possible_ortholog 4 retrogenes
retro_nleu_1041, retro_nleu_1062, retro_nleu_2385, retro_nleu_887,
Ochotona princeps ENSOPRG00000007792 ortholog_one2one 1 retrogene
retro_opri_735,
Pongo abelii ENSPPYG00000006578 possible_ortholog 1 retrogene
retro_pabe_152,
Rattus norvegicus ENSRNOG00000009378 ortholog_one2many 5 retrogenes
retro_rnor_1192, retro_rnor_1621, retro_rnor_2061, retro_rnor_2484, retro_rnor_949,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_630 61.81 50.26
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2. retro_ocun_631 95.10 78.06
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3. retro_ocun_1134 98.49 50.77
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Download FASTA sequences of all ENSOCUG00000008794 retrocopies