RetrogeneDB ID: | retro_pabe_152 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:136208067..136209351(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000014114 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000006578 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.91 % |
Parental protein coverage: | 81.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG |
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG | |
Retrocopy | MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG |
Parental | RAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSK |
RAVARIPRV.GGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSK | |
Retrocopy | RAVARIPRVQGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSK |
Parental | GHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII |
GHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWN.IKKVYASQRMRAGKGKMRNRRRIQRRGPCII | |
Retrocopy | GHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNGIKKVYASQRMRAGKGKMRNRRRIQRRGPCII |
Parental | YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLP |
YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNY.LP | |
Retrocopy | YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYSLP |
Parental | MHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR |
MHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR | |
Retrocopy | MHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR |
Parental | VDKAAAAAAALQAKSDEKAAVAGKKPVLVPRG |
VDKAAAAAAALQAKS.EKAAVAGKKPV....G | |
Retrocopy | VDKAAAAAAALQAKSEEKAAVAGKKPVVGKKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .61 RPM | 132 .26 RPM |
SRP007412_cerebellum | 1 .09 RPM | 136 .68 RPM |
SRP007412_heart | 0 .78 RPM | 142 .84 RPM |
SRP007412_kidney | 1 .33 RPM | 266 .57 RPM |
SRP007412_liver | 1 .50 RPM | 238 .66 RPM |