RetrogeneDB ID: | retro_fcat_1136 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:157840419..157841239(+) | ||
Located in intron of: | ENSFCAG00000010646 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000012293 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.63 % |
Parental protein coverage: | 66.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELAGHQTSAESWGTG |
ACA.PL.SVYSEKGESSGKN.TLP.V.KAPI.P..VNFVHTNL..NNRQPY.V..ELAGHQTSAES.GTG | |
Retrocopy | ACACPLVSVYSEKGESSGKNTTLPSVLKAPIPPYTVNFVHTNLSTNNRQPYTVM<ELAGHQTSAES*GTG |
Parental | RAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSK |
RAVAR..RV.G.GTH.S..GAFGN.C.GG.MFAPTKTW..WH.............SAL.ASALP.LVMSK | |
Retrocopy | RAVARTSRV*GRGTHHSSLGAFGNPCHGGSMFAPTKTWCHWHQSEHNSE---VVWSALGASALPELVMSK |
Parental | GHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKV-YASQRMRAGKGKMRNRRRIQRRGPCI |
GH.IEEV.ELPLV.ED.VEGYKKTKEAVLLL.KLKAWNDIKKV..A.Q...AG.GK.RN..R.Q..GPCI | |
Retrocopy | GHHIEEVSELPLVIEDEVEGYKKTKEAVLLLMKLKAWNDIKKV>NATQQRSAGNGKARNHCRLQCGGPCI |
Parental | IYNEDNGIIKAFRNIPEGITLLNVSKLNILKLAPGGHVGRF-CIWTESAFRKLDDLYGTWRKAASLKSNY |
IYNEDNG.I.A.RNI..GITL.....LNIL.LAPGGH.G.F..IWTESAF.KLD.LYGTW.KA.SLK.NY | |
Retrocopy | IYNEDNGVIQAYRNI-LGITLFS-KQLNILTLAPGGH-GTF>HIWTESAFPKLDVLYGTWCKASSLKNNY |
Parental | NL |
.L | |
Retrocopy | TL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 345 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 1238 .75 RPM |
SRP017611_liver | 0 .00 RPM | 639 .80 RPM |