RetrogeneDB ID: | retro_btau_610 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 15:82099344..82100369(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSBTAG00000005211 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L4 [Source:UniProtKB/Swiss-Prot;Acc:Q58DW0] |
Percent Identity: | 76.01 % |
Parental protein coverage: | 81.75 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | ACARPLISVYSEKGE-SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG |
ACA.PL..V.SEKG..SSG.NVTLPAVFKAP.RPD.VN.VHTNLRK.NRQP.A.S..AGHQT.AE..GTG | |
Retrocopy | ACACPLTPVCSEKGA<SSGRNVTLPAVFKAPTRPDSVN*VHTNLRKSNRQPSAASRSAGHQTRAECRGTG |
Parental | RAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSK |
RAVARIPRV.GGGT.RSGQGA.GN.CRGG..FAPT.T.RRWHRR..T.Q.R..ICSA.A..A.P.LVM.K | |
Retrocopy | RAVARIPRVPGGGTPRSGQGASGNTCRGGHLFAPTRT*RRWHRRASTEQQRCSICSAPATPASPLLVMPK |
Parental | GHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII |
GH...E.PELPL..EDKVEGYKKTK.AVLLLKKLKA.NDI.KVYASQRMRAG.GK.RN.RR.QRRGP..I | |
Retrocopy | GHCVGEAPELPLEAEDKVEGYKKTKQAVLLLKKLKARNDIRKVYASQRMRAGRGKIRNPRRVQRRGPSLI |
Parental | YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLP |
.NED.GII.AFRNIPGI...N.SKLNILKLAP.GHVGRFCI.T.SA.RK.DELYGTW..AASLKSNYNLP | |
Retrocopy | CNEDSGIIRAFRNIPGI---NGSKLNILKLAPDGHVGRFCIRT*SALRKPDELYGTWHQAASLKSNYNLP |
Parental | MHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN |
.HKMLNTDLS..LKSPEIQRAL.APRKKIHRRVL.KN.LK.LR.MLKLNP.AKT...N..L.QA.N | |
Retrocopy | LHKMLNTDLSSLLKSPEIQRAL*APRKKIHRRVLRKNALKTLRLMLKLNPHAKTTHQNALLQQAKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 490 .76 RPM |
ERP005899_muscle | 0 .00 RPM | 2073 .82 RPM |
SRP017611_brain | 0 .14 RPM | 289 .65 RPM |
SRP017611_kidney | 0 .06 RPM | 645 .29 RPM |
SRP017611_liver | 0 .08 RPM | 337 .22 RPM |
SRP030211_testis | 0 .43 RPM | 182 .13 RPM |