Parental gene: | PABPC4, ENSOPRG00000011984 |
| Aliases: | None |
| Description: | poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557] |
| Organism: | Southern American pika (Ochotona princeps) |
| Coordinates: | GeneScaffold_628:381..12886(-) |
>ENSOPRG00000011984
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTATGAAAAGTTCAGCCCTGCGGGGCCTGTGCTATCCATCCGGGTCTGCCGTGATATGATCACCCGGCGCTCCCTGGGTT
ATGCCTACGTGAACTTCCAGCAGCCAGCCGATGCTGAGCGGGCCTTGGACACGATGAACTTCGATGTGATTAAGGGAAAG
CCAATCCGCATAATGTGGTCTCAGAGGGATCCCTCTCTGAGAAAGTCTGGCGTGGGGAATGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAAGCACTTTATGACACATTTTCTGCTTTTGGAAACATCCTATCCTGTAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTTCACTTTGAGACGCAAGAGGCTGCCGACAAGGCCATAGAGAAGATGAACGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTAGGCAGGTTTAAGTCTCGCAAAGAGCGGGAAGCTGAACTTGGAGCCAAAGC
CAAGGAATTCACTAATGTTTATATCAAAAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGATCTGTTTAGTCAGT
TTGGTAAAACGCTGAGTGTGAAGGTGATGAGAGATCCCACTGGGAAATCCAAAGGCTTTGGTTTTGTGAGTTATGAGAAG
CATGAAGATGCCAATAAGGCCGTGGAAGAGATGAATGGAAAAGAAATCGGCGGGAAAGTCATTTTTGTAGGCCGTGCACA
GAAGAAAGTAGAACGGCAGGCCGAATTAAAACGGAAATTCGAGCAGCTGAAACAGGAGCGAATTAGTCGATACCAGGGTG
TAAACCTCTACATTAAGAACTTGGATGACACCATTGATGATGAGAAATTACGAAAAGAATTTTCTCCTTTCGGGTCAATC
ACCAGTGCAAAGGTGATGCTGGAGGATGGAAGAAGCAAAGGGTTTGGCTTTGTTTGCTTCTCATCTCCTGAAGAGGCTAC
CAAAGCAGTCACTGAGATGAATGGACGCATCGTGGGCTCCAAGCCACTGTACGTTGCCCTGGCCCAGAGAAAGGAAGAGA
GAAAGGCCCATCTGACCAATCAGTACATGCAGCGTGTGGCTGGAATGAGAGCACTCCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCTGGTGGCTATTTTGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCTTATTACACCCCTAACCA
GCTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGGCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTGCCTCTCGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAGCCCCTGACC
GCCTCCATGCTGGCCGCAGCACCCCCCCAGGAACAGAAGCAGATGCTGGGAGAACGATTGTTCCCCCTCATCCAAACGAC
GCACGCAAACCTGGCCGGGAAGATCACGGGGATGCTGCTGGAGATCGACAACTCGGAGCTGCTGCACATGCTGGAGTCCC
CCGAGTCCCTCCACTCCACG
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTATGAAAAGTTCAGCCCTGCGGGGCCTGTGCTATCCATCCGGGTCTGCCGTGATATGATCACCCGGCGCTCCCTGGGTT
ATGCCTACGTGAACTTCCAGCAGCCAGCCGATGCTGAGCGGGCCTTGGACACGATGAACTTCGATGTGATTAAGGGAAAG
CCAATCCGCATAATGTGGTCTCAGAGGGATCCCTCTCTGAGAAAGTCTGGCGTGGGGAATGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAAGCACTTTATGACACATTTTCTGCTTTTGGAAACATCCTATCCTGTAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTTCACTTTGAGACGCAAGAGGCTGCCGACAAGGCCATAGAGAAGATGAACGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTAGGCAGGTTTAAGTCTCGCAAAGAGCGGGAAGCTGAACTTGGAGCCAAAGC
CAAGGAATTCACTAATGTTTATATCAAAAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGATCTGTTTAGTCAGT
TTGGTAAAACGCTGAGTGTGAAGGTGATGAGAGATCCCACTGGGAAATCCAAAGGCTTTGGTTTTGTGAGTTATGAGAAG
CATGAAGATGCCAATAAGGCCGTGGAAGAGATGAATGGAAAAGAAATCGGCGGGAAAGTCATTTTTGTAGGCCGTGCACA
GAAGAAAGTAGAACGGCAGGCCGAATTAAAACGGAAATTCGAGCAGCTGAAACAGGAGCGAATTAGTCGATACCAGGGTG
TAAACCTCTACATTAAGAACTTGGATGACACCATTGATGATGAGAAATTACGAAAAGAATTTTCTCCTTTCGGGTCAATC
ACCAGTGCAAAGGTGATGCTGGAGGATGGAAGAAGCAAAGGGTTTGGCTTTGTTTGCTTCTCATCTCCTGAAGAGGCTAC
CAAAGCAGTCACTGAGATGAATGGACGCATCGTGGGCTCCAAGCCACTGTACGTTGCCCTGGCCCAGAGAAAGGAAGAGA
GAAAGGCCCATCTGACCAATCAGTACATGCAGCGTGTGGCTGGAATGAGAGCACTCCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCTGGTGGCTATTTTGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCTTATTACACCCCTAACCA
GCTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGGCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTGCCTCTCGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAGCCCCTGACC
GCCTCCATGCTGGCCGCAGCACCCCCCCAGGAACAGAAGCAGATGCTGGGAGAACGATTGTTCCCCCTCATCCAAACGAC
GCACGCAAACCTGGCCGGGAAGATCACGGGGATGCTGCTGGAGATCGACAACTCGGAGCTGCTGCACATGCTGGAGTCCC
CCGAGTCCCTCCACTCCACG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011535 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000002512 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000009552 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000015254 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000090621 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004002 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000016633 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007497 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017657 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014414 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000011257 | ortholog_one2many | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011928 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000562 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004067 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001506 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000000573 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015642 | ortholog_one2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000018139 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_opri_1133 | 70.28 | 58.06 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOPRG00000011984 retrocopies