Parental gene: | PABPC4, ENSCJAG00000002512 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:73951367..73999160(-) |
>ENSCJAG00000002512
ATGAACGCTGCGGCTAGCAGCTACCCCATGGCCTCCCTGTACGTGGGCGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTACGAAAAGTTCAGCCCCGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCTTGGGCT
ATGCCTACGTCAACTTCCAGCAGCCGGCCGATGCTGAGCGGGCTTTGGACACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGCATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGAAACATTCTATCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCGAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTATTTGTGGGCAGATTCAAGTCTCGCAAAGAGCGGGAAGCCGAGCTTGGAGCCAAAGC
CAAGGAATTCACCAATGTTTATATCAAAAACTTCGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTATTCATTCAGT
TTGGTAAGACCCTGAGTGTCAAGGTGATGAGAGATCCCAACGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATAAGTGGGAAAATCATATTTGTAGGCCGTGCACA
AAAGAAAGTAGAACGGCAGGCAGAGTTAAAACGGAAATTTGAGCAGTTGAAACAGGAAAGAATTAGTCGATACCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGATACTATTGATGATGAGAAATTAAGGAAAGAGTTTTCTCCTTTCGGATCAATT
ACCAGTGCTAAGGTAATGTTGGAAGATGGAAGAAGCAAAGGGTTTGGCTTTGTCTGCTTCTCGTCTCCTGAAGAGGCAAC
CAAAGCAGTCACTGAGATGAATGGGCGCATTGTGGGTTCCAAGCCCCTGTATGTTGCCCTGGCCCAGAGGAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTATATGCAACGAGTGGCTGGAATGAGAGCACTTCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCGGGTGGCTACTTCGTGCCAGCAGTCCCACAGTCTTACACGGCTCAGGGAAGGCCTCCATATTATAC
ACCTAACCAGTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAA
GTGCTATACGCCAGTCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTC
CCTACTACCACTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCA
AGGGCTGACTGACAGCTGCCAGTCTGGAGGCGTTCCCACAGCTGTGCAGAACTTAGCGCCACGTGCTGCTGTTGCTGCTA
CTGCTCCCCGGGCTGTTGCCCCCTACAAATACGCCTCCAGTGTCCGCAGCCCTCATCCTGCCATACAGCCTCTTCAGGCA
CCGCAGCCTGCCGTCCATGTGCAGGGGCAGGAGCCACTGACTGCCTCCATGCTGGCTGCCGCACCCCCCCAGGAACAGAA
GCAGATGCTGGGAGAACGTTTATTCCCACTCATCCAAACAATGCATTCAAACCTGGCTGGAAAAATCACAGGAATGCTGC
TGGAGATTGACAACTCTGAGCTGCTGCACATGTTAGAGTCCCCTGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTAGCA
GTTCTACAGGCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG
ATGAACGCTGCGGCTAGCAGCTACCCCATGGCCTCCCTGTACGTGGGCGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTACGAAAAGTTCAGCCCCGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCTTGGGCT
ATGCCTACGTCAACTTCCAGCAGCCGGCCGATGCTGAGCGGGCTTTGGACACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGCATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGAAACATTCTATCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCGAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTATTTGTGGGCAGATTCAAGTCTCGCAAAGAGCGGGAAGCCGAGCTTGGAGCCAAAGC
CAAGGAATTCACCAATGTTTATATCAAAAACTTCGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTATTCATTCAGT
TTGGTAAGACCCTGAGTGTCAAGGTGATGAGAGATCCCAACGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATAAGTGGGAAAATCATATTTGTAGGCCGTGCACA
AAAGAAAGTAGAACGGCAGGCAGAGTTAAAACGGAAATTTGAGCAGTTGAAACAGGAAAGAATTAGTCGATACCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGATACTATTGATGATGAGAAATTAAGGAAAGAGTTTTCTCCTTTCGGATCAATT
ACCAGTGCTAAGGTAATGTTGGAAGATGGAAGAAGCAAAGGGTTTGGCTTTGTCTGCTTCTCGTCTCCTGAAGAGGCAAC
CAAAGCAGTCACTGAGATGAATGGGCGCATTGTGGGTTCCAAGCCCCTGTATGTTGCCCTGGCCCAGAGGAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTATATGCAACGAGTGGCTGGAATGAGAGCACTTCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCGGGTGGCTACTTCGTGCCAGCAGTCCCACAGTCTTACACGGCTCAGGGAAGGCCTCCATATTATAC
ACCTAACCAGTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAA
GTGCTATACGCCAGTCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTC
CCTACTACCACTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCA
AGGGCTGACTGACAGCTGCCAGTCTGGAGGCGTTCCCACAGCTGTGCAGAACTTAGCGCCACGTGCTGCTGTTGCTGCTA
CTGCTCCCCGGGCTGTTGCCCCCTACAAATACGCCTCCAGTGTCCGCAGCCCTCATCCTGCCATACAGCCTCTTCAGGCA
CCGCAGCCTGCCGTCCATGTGCAGGGGCAGGAGCCACTGACTGCCTCCATGCTGGCTGCCGCACCCCCCCAGGAACAGAA
GCAGATGCTGGGAGAACGTTTATTCCCACTCATCCAAACAATGCATTCAAACCTGGCTGGAAAAATCACAGGAATGCTGC
TGGAGATTGACAACTCTGAGCTGCTGCACATGTTAGAGTCCCCTGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTAGCA
GTTCTACAGGCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 30 .69 RPM |
| SRP051959_skeletal_muscle | 63 .59 RPM |
| SRP051959_lymph_node | 20 .73 RPM |
| SRP051959_lung | 22 .81 RPM |
| SRP051959_liver | 26 .92 RPM |
| SRP051959_kidney | 23 .67 RPM |
| SRP051959_heart | 36 .68 RPM |
| SRP051959_colon | 17 .20 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011535 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010803 | other_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014861 | other_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015833 | within_species_paralog | 5 retrogenes | |
| Cavia porcellus | ENSCPOG00000009552 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000015254 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000090621 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004002 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000016633 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007497 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017657 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014414 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000011257 | ortholog_one2many | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011928 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000562 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004067 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000011984 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001506 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000000573 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015642 | ortholog_one2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000018139 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_214 | 73.70 | 55.05 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_284 | 66.58 | 54.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2722 | 95.70 | 63.20 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000002512 retrocopies