Parental gene: | PABPC4, ENSG00000090621 |
| Aliases: | PABPC4, APP-1, APP1, PABP4, iPABP |
| Description: | poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 1:40026487..40042462(-) |
>ENSG00000090621
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGCGACCTGCATTCGGACGTCACCGAGGCCATGCT
GTACGAAAAGTTCAGCCCCGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGCT
ATGCCTACGTCAACTTCCAGCAGCCGGCCGACGCTGAGCGGGCTTTGGACACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGCATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGAAACATACTGTCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTATTTGTGGGCAGATTCAAGTCTCGCAAAGAGCGGGAAGCTGAGCTTGGAGCCAAAGC
CAAGGAATTCACCAATGTTTATATCAAAAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTATTCAGTCAGT
TTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGATCCCAATGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATAAGTGGTAAAATCATATTTGTAGGCCGTGCACA
AAAGAAAGTAGAACGGCAGGCAGAGTTAAAACGGAAATTTGAACAGTTGAAACAGGAGAGAATTAGTCGATATCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGACACTATTGATGATGAGAAATTAAGGAAAGAATTTTCTCCTTTTGGATCAATT
ACCAGTGCTAAGGTAATGCTGGAGGATGGAAGAAGCAAAGGGTTTGGCTTCGTCTGCTTCTCATCTCCTGAAGAAGCAAC
CAAAGCAGTCACTGAGATGAATGGACGCATTGTGGGCTCCAAGCCACTATATGTTGCCCTGGCCCAGAGGAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTATATGCAACGAGTGGCTGGAATGAGAGCACTTCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCGGGTGGCTACTTTGTGCCAGCAGTCCCACAGGCTCAGGGAAGGCCTCCATATTATACACCTAACCA
GTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACC
ACTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGCGTTCCCACAGCTGTGCAGAACTTAGCGCCACGCGCTGCTGTTGCTGCTGCTGCTCCCC
GGGCTGTTGCCCCCTACAAATACGCCTCCAGTGTCCGCAGCCCTCATCCTGCCATACAGCCTCTGCAGGCACCCCAGCCT
GCGGTCCATGTGCAGGGGCAGGAGCCACTGACTGCCTCCATGCTGGCTGCAGCACCCCCCCAGGAACAGAAGCAGATGCT
GGGAGAACGCTTGTTCCCACTCATCCAAACAATGCATTCAAATCTGGCTGGGAAGATCACGGGAATGCTGCTGGAGATAG
ACAACTCTGAGCTGCTGCACATGTTAGAGTCCCCCGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTAGCAGTTCTACAG
GCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGCGACCTGCATTCGGACGTCACCGAGGCCATGCT
GTACGAAAAGTTCAGCCCCGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGCT
ATGCCTACGTCAACTTCCAGCAGCCGGCCGACGCTGAGCGGGCTTTGGACACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGCATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGAAACATACTGTCCTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTATTTGTGGGCAGATTCAAGTCTCGCAAAGAGCGGGAAGCTGAGCTTGGAGCCAAAGC
CAAGGAATTCACCAATGTTTATATCAAAAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTATTCAGTCAGT
TTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGATCCCAATGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATAAGTGGTAAAATCATATTTGTAGGCCGTGCACA
AAAGAAAGTAGAACGGCAGGCAGAGTTAAAACGGAAATTTGAACAGTTGAAACAGGAGAGAATTAGTCGATATCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGACACTATTGATGATGAGAAATTAAGGAAAGAATTTTCTCCTTTTGGATCAATT
ACCAGTGCTAAGGTAATGCTGGAGGATGGAAGAAGCAAAGGGTTTGGCTTCGTCTGCTTCTCATCTCCTGAAGAAGCAAC
CAAAGCAGTCACTGAGATGAATGGACGCATTGTGGGCTCCAAGCCACTATATGTTGCCCTGGCCCAGAGGAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTATATGCAACGAGTGGCTGGAATGAGAGCACTTCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCGGGTGGCTACTTTGTGCCAGCAGTCCCACAGGCTCAGGGAAGGCCTCCATATTATACACCTAACCA
GTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACC
ACTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGCGTTCCCACAGCTGTGCAGAACTTAGCGCCACGCGCTGCTGTTGCTGCTGCTGCTCCCC
GGGCTGTTGCCCCCTACAAATACGCCTCCAGTGTCCGCAGCCCTCATCCTGCCATACAGCCTCTGCAGGCACCCCAGCCT
GCGGTCCATGTGCAGGGGCAGGAGCCACTGACTGCCTCCATGCTGGCTGCAGCACCCCCCCAGGAACAGAAGCAGATGCT
GGGAGAACGCTTGTTCCCACTCATCCAAACAATGCATTCAAATCTGGCTGGGAAGATCACGGGAATGCTGCTGGAGATAG
ACAACTCTGAGCTGCTGCACATGTTAGAGTCCCCCGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTAGCAGTTCTACAG
GCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 60 .43 RPM |
| bodymap2_lung | 96 .19 RPM |
| bodymap2_breast | 121 .50 RPM |
| bodymap2_adipose | 159 .98 RPM |
| bodymap2_adrenal | 108 .10 RPM |
| bodymap2_skeletal_muscle | 882 .33 RPM |
| bodymap2_thyroid | 153 .78 RPM |
| bodymap2_prostate | 126 .78 RPM |
| bodymap2_colon | 144 .98 RPM |
| bodymap2_testis | 252 .48 RPM |
| bodymap2_brain | 45 .36 RPM |
| bodymap2_heart | 106 .45 RPM |
| bodymap2_white_blood_cells | 134 .07 RPM |
| bodymap2_lymph_node | 123 .71 RPM |
| bodymap2_ovary | 152 .23 RPM |
| bodymap2_kidney | 70 .11 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011535 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000002512 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000009552 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000015254 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000070756 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000076067 | other_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000153250 | other_paralog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000004002 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000016633 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007497 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017657 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014414 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000011257 | ortholog_one2many | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011928 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000562 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004067 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000011984 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001506 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000000573 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015642 | ortholog_one2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000018139 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_74 | 66.58 | 59.19 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_109 | 75.41 | 60.16 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000090621 retrocopies