Parental gene:

RPS26, ENSPPYG00000004642

Aliases:None
Description:ribosomal protein S26 [Source:HGNC Symbol;Acc:10414]
Organism:Orangutan (Pongo abelii)
Coordinates:12:55792686..55795564(+)


>ENSPPYG00000004642
ATGACAAAGAAAAGAAGGAACAACGGTCGTGCCAAAAAGGGCCGCGGCCACGTGCAGCCTATTCGCTGCACTAACTGTGC
CCGATGCGTGCCCAAGGACAAGGCCATTAAGAAATTCGTCATTCGAAACATAGTGGAGGCCGCAGCAGTCAGGGACATTT
CTGAAGCGAGCGTCTTCGATGCCTATGTGCTTCCCAAGCTGTATGTGAAGCTACATTACTGTGTGAGTTGTGCAATTCAC
AGCAAAGTAGTCAGGAATCGATCTCGTGAAGCCCGCAAGGACCGAACACCCCCACCCCGATTTAGACCTGCGGGTGCTGC
CCCACGTCCCCCACCAAAGCCTATGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 60 .38 RPM
SRP007412_cerebellum 24 .69 RPM
SRP007412_heart 60 .15 RPM
SRP007412_kidney 128 .71 RPM
SRP007412_liver 113 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003260 possible_ortholog 7 retrogenes
retro_amel_1037, retro_amel_1240, retro_amel_303, retro_amel_777, retro_amel_926, retro_amel_927, retro_amel_928,
Bos taurus ENSBTAG00000038896 possible_ortholog 3 retrogenes
retro_btau_191, retro_btau_25, retro_btau_724,
Choloepus hoffmanni ENSCHOG00000001489 ortholog_one2one 10 retrogenes
retro_chof_1367, retro_chof_1423, retro_chof_1793, retro_chof_1825, retro_chof_2156, retro_chof_2255, retro_chof_2482, retro_chof_382, retro_chof_611, retro_chof_756,
Cavia porcellus ENSCPOG00000023630 possible_ortholog 6 retrogenes
retro_cpor_115, retro_cpor_1231, retro_cpor_134, retro_cpor_173, retro_cpor_48, retro_cpor_992,
Dipodomys ordii ENSDORG00000001151 possible_ortholog 2 retrogenes
retro_dord_239, retro_dord_279,
Echinops telfairi ENSETEG00000004510 possible_ortholog 35 retrogenes
retro_etel_1072, retro_etel_1145, retro_etel_1149, retro_etel_1175, retro_etel_1321, retro_etel_1357, retro_etel_1407, retro_etel_1423, retro_etel_1469, retro_etel_1498, retro_etel_155, retro_etel_162, retro_etel_1647, retro_etel_1691, retro_etel_1703, retro_etel_1734, retro_etel_1801, retro_etel_181, retro_etel_1859, retro_etel_1913, retro_etel_1963, retro_etel_2006, retro_etel_2043, retro_etel_2138, retro_etel_2146, retro_etel_2175, retro_etel_269, retro_etel_354, retro_etel_38, retro_etel_424, retro_etel_462, retro_etel_741, retro_etel_77, retro_etel_894, retro_etel_898,
Gorilla gorilla ENSGGOG00000011566 possible_ortholog 6 retrogenes
retro_ggor_106, retro_ggor_121, retro_ggor_19, retro_ggor_55, retro_ggor_56, retro_ggor_63,
Loxodonta africana ENSLAFG00000013329 possible_ortholog 8 retrogenes
retro_lafr_180, retro_lafr_240, retro_lafr_40, retro_lafr_464, retro_lafr_513, retro_lafr_768, retro_lafr_835, retro_lafr_962,
Myotis lucifugus ENSMLUG00000029968 possible_ortholog 10 retrogenes
retro_mluc_1153, retro_mluc_149, retro_mluc_1925, retro_mluc_2065, retro_mluc_2163, retro_mluc_2462, retro_mluc_266, retro_mluc_309, retro_mluc_332, retro_mluc_477,
Mus musculus ENSMUSG00000025362 possible_ortholog 1 retrogene
retro_mmus_115,
Pan troglodytes ENSPTRG00000005075 possible_ortholog 1 retrogene
retro_ptro_74,
Rattus norvegicus ENSRNOG00000005517 ortholog_one2one 1 retrogene
retro_rnor_196,
Sus scrofa ENSSSCG00000000374 possible_ortholog 2 retrogenes
retro_sscr_406, retro_sscr_650,
Ictidomys tridecemlineatus ENSSTOG00000010559 possible_ortholog 12 retrogenes
retro_itri_1300, retro_itri_1446, retro_itri_1477, retro_itri_1488, retro_itri_289, retro_itri_418, retro_itri_469, retro_itri_470, retro_itri_643, retro_itri_652, retro_itri_729, retro_itri_871,
Tursiops truncatus ENSTTRG00000015012 ortholog_one2one 16 retrogenes
retro_ttru_1169, retro_ttru_1300, retro_ttru_131, retro_ttru_1319, retro_ttru_1329, retro_ttru_1412, retro_ttru_1514, retro_ttru_1635, retro_ttru_17, retro_ttru_1734, retro_ttru_1795, retro_ttru_1897, retro_ttru_428, retro_ttru_47, retro_ttru_651, retro_ttru_893,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_25 89.29 97.39
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_pabe_140 96.52 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_pabe_155 96.52 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_pabe_237 91.38 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_pabe_809 79.31 100.00
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_pabe_903 82.30 98.26
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_pabe_924 91.38 100.00
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_pabe_1234 96.52 100.00
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_pabe_1372 80.17 100.00
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_pabe_1405 80.17 100.00
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_pabe_1431 87.07 100.00
Please wait, loading
Please wait, loading
Please wait, loading
12. retro_pabe_1613 87.83 100.00
Please wait, loading
Please wait, loading
Please wait, loading
13. retro_pabe_2835 75.86 100.00
Please wait, loading
Please wait, loading
Please wait, loading
14. retro_pabe_3068 96.52 100.00
Please wait, loading
Please wait, loading
Please wait, loading
15. retro_pabe_3399 94.78 100.00
Please wait, loading
Please wait, loading
Please wait, loading
16. retro_pabe_3432 89.47 99.13
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000004642 retrocopies