Parental gene:

RPS26, ENSSTOG00000010559

Aliases:None
Description:ribosomal protein S26 [Source:HGNC Symbol;Acc:10414]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393456.1:452706..454721(+)


>ENSSTOG00000010559
ACCAAAAAAAGAAGGAATAATGGTCGTGCGAAAAAGGGCCGCGGGCATGTGCAGCCTATTCGTTGCACGAACTGTGCCAG
GTGCGTGCCCAAGGACAAGGCCATTAAGAAGTTCGTCATTCGAAACATCGTGGAGGCCGCAGCCGTCAGGGACATTTCCG
AAGCAAGTGTGTTCGACGCTTATGTGCTTCCCAAGCTGTATGTGAAACTGCATTACTGTGTGAGTTGTGCCATTCACAGC
AAGGTAGTCAGGAATCGATCTCGTGAAGCCCGGAAGGACCGGACACCCCCACCTCGTTTTAGACCTGCTGGTGCTGCCCC
ACGACCTCCACCAAAGCCCATGTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000038896 possible_ortholog 3 retrogenes
retro_btau_191, retro_btau_25, retro_btau_724,
Cavia porcellus ENSCPOG00000023630 possible_ortholog 6 retrogenes
retro_cpor_115, retro_cpor_1231, retro_cpor_134, retro_cpor_173, retro_cpor_48, retro_cpor_992,
Dipodomys ordii ENSDORG00000001151 ortholog_one2one 2 retrogenes
retro_dord_239, retro_dord_279,
Echinops telfairi ENSETEG00000004510 ortholog_one2one 35 retrogenes
retro_etel_1072, retro_etel_1145, retro_etel_1149, retro_etel_1175, retro_etel_1321, retro_etel_1357, retro_etel_1407, retro_etel_1423, retro_etel_1469, retro_etel_1498, retro_etel_155, retro_etel_162, retro_etel_1647, retro_etel_1691, retro_etel_1703, retro_etel_1734, retro_etel_1801, retro_etel_181, retro_etel_1859, retro_etel_1913, retro_etel_1963, retro_etel_2006, retro_etel_2043, retro_etel_2138, retro_etel_2146, retro_etel_2175, retro_etel_269, retro_etel_354, retro_etel_38, retro_etel_424, retro_etel_462, retro_etel_741, retro_etel_77, retro_etel_894, retro_etel_898,
Gorilla gorilla ENSGGOG00000011566 possible_ortholog 6 retrogenes
retro_ggor_106, retro_ggor_121, retro_ggor_19, retro_ggor_55, retro_ggor_56, retro_ggor_63,
Loxodonta africana ENSLAFG00000013329 possible_ortholog 8 retrogenes
retro_lafr_180, retro_lafr_240, retro_lafr_40, retro_lafr_464, retro_lafr_513, retro_lafr_768, retro_lafr_835, retro_lafr_962,
Myotis lucifugus ENSMLUG00000029968 ortholog_one2many 10 retrogenes
retro_mluc_1153, retro_mluc_149, retro_mluc_1925, retro_mluc_2065, retro_mluc_2163, retro_mluc_2462, retro_mluc_266, retro_mluc_309, retro_mluc_332, retro_mluc_477,
Macaca mulatta ENSMMUG00000017042 possible_ortholog 7 retrogenes
retro_mmul_1009, retro_mmul_1017, retro_mmul_1676, retro_mmul_1944, retro_mmul_2092, retro_mmul_294, retro_mmul_646,
Mus musculus ENSMUSG00000025362 possible_ortholog 1 retrogene
retro_mmus_115,
Pongo abelii ENSPPYG00000004642 possible_ortholog 16 retrogenes
retro_pabe_1234, retro_pabe_1372, retro_pabe_140, retro_pabe_1405, retro_pabe_1431, retro_pabe_155, retro_pabe_1613, retro_pabe_237, retro_pabe_25, retro_pabe_2835, retro_pabe_3068, retro_pabe_3399, retro_pabe_3432, retro_pabe_809, retro_pabe_903, retro_pabe_924,
Pan troglodytes ENSPTRG00000005075 possible_ortholog 1 retrogene
retro_ptro_74,
Rattus norvegicus ENSRNOG00000005517 possible_ortholog 1 retrogene
retro_rnor_196,
Sus scrofa ENSSSCG00000000374 possible_ortholog 2 retrogenes
retro_sscr_406, retro_sscr_650,
Tursiops truncatus ENSTTRG00000015012 possible_ortholog 16 retrogenes
retro_ttru_1169, retro_ttru_1300, retro_ttru_131, retro_ttru_1319, retro_ttru_1329, retro_ttru_1412, retro_ttru_1514, retro_ttru_1635, retro_ttru_17, retro_ttru_1734, retro_ttru_1795, retro_ttru_1897, retro_ttru_428, retro_ttru_47, retro_ttru_651, retro_ttru_893,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_289 70.42 62.28
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2. retro_itri_418 87.72 100.00
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3. retro_itri_469 68.48 78.95
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4. retro_itri_470 68.48 78.95
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5. retro_itri_643 68.64 100.00
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6. retro_itri_652 68.35 67.54
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7. retro_itri_729 64.86 97.37
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8. retro_itri_871 52.63 64.91
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9. retro_itri_1300 51.39 61.40
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10. retro_itri_1446 52.08 81.58
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11. retro_itri_1477 53.47 85.96
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12. retro_itri_1488 73.04 100.00
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Download FASTA sequences of all ENSSTOG00000010559 retrocopies