RetrogeneDB ID: | retro_itri_1446 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393490.1:1830560..1830842(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS26 | ||
Ensembl ID: | ENSSTOG00000010559 | ||
Aliases: | None | ||
Description: | ribosomal protein S26 [Source:HGNC Symbol;Acc:10414] |
Percent Identity: | 52.08 % |
Parental protein coverage: | 81.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | CTNCARCVPKDKAIKKFVIRNIVEA-AAVRDISEASVFDAYVLPKLYVKLH-YCVSCAIHSKVVRNRSRE |
C.NC..C..KDK..KKFVIRN..EA....RDISE.S.F.AYVLPKLY.K...Y..S.AIHSKV....... | |
Retrocopy | CFNCMLCMSKDKTFKKFVIRNPREA<TTIRDISEMSIFNAYVLPKLYKKIM>YYLSYAIHSKVGGQELIL |
Parental | ARKDRTPP-PRFRPAGAAPRPPPKPM |
....R..P.P.FR.A..AP..P.K.. | |
Retrocopy | GGSERLNPTP*FRTAAVAPWSPTKSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |