Parental gene:

C1D, ENSPPYG00000012354

Aliases:None
Description:Nuclear nucleic acid-binding protein C1D [Source:UniProtKB/Swiss-Prot;Acc:Q5RBU4]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:42681846..42704192(+)


>ENSPPYG00000012354
AGCATCAGAAAGCGCCGCTCCCGGCACGGGGACAGCCGGCGCGTCATTGTCGTCATCGTTGCCCGACCGCTTTCCGGGAG
ACTGGAGTCGAAGGCCGTGAGGTATTTTTCAAAGTCAGCCATAATGGCAGGTGAAGAAATTAATGAAGACTATCCAGTAG
AAATTCACGAGTATTTGTCAGCGTTTGAGAATTCCATTGGTGCTGTGGATGAGATGCTGAAGACCATGATGTCTGTTTCT
AGAAATGAGTTATTGCAGAAGTTGGATCCACTTGAACAAGCAAAAGTGGATTTGGTTTCTGCATACACATTAAATTCAAT
GTTTTGGGTTTATTTGGCAACCCAAGGAGTTAATCCTAAGGAACATCCAGTAAAACAGGAATTGGAAAGAATCAGAGTAT
ATATGAACAGAGTCAAGGAAATAACAGACAAGAAAAAGGCTGGCAAGCTGGACAGAGGTGCAGCTTCAAGATTTGTAAAA
AATGCCCTCTGGGAACCAAAACCGAAAAATGCATCAAAAGTTGCCAATAAAGGAAAAAGTAAAAGTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .92 RPM
SRP007412_cerebellum 9 .00 RPM
SRP007412_heart 5 .42 RPM
SRP007412_kidney 8 .39 RPM
SRP007412_liver 5 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004859 ortholog_one2many 1 retrogene
retro_amel_561,
Bos taurus ENSBTAG00000004567 ortholog_one2many 1 retrogene
retro_btau_1532,
Canis familiaris ENSCAFG00000030099 ortholog_one2many 1 retrogene
retro_cfam_1469,
Choloepus hoffmanni ENSCHOG00000006719 ortholog_one2many 3 retrogenes
retro_chof_1368, retro_chof_2011, retro_chof_710,
Callithrix jacchus ENSCJAG00000006589 ortholog_one2many 2 retrogenes
retro_cjac_2930, retro_cjac_856,
Cavia porcellus ENSCPOG00000006739 ortholog_one2many 1 retrogene
retro_cpor_1251,
Echinops telfairi ENSETEG00000014857 ortholog_one2many 5 retrogenes
retro_etel_152, retro_etel_1820, retro_etel_2119, retro_etel_2163, retro_etel_524,
Felis catus ENSFCAG00000028933 ortholog_one2many 1 retrogene
retro_fcat_1091,
Homo sapiens ENSG00000197223 ortholog_one2one 5 retrogenes
retro_hsap_659, retro_hsap_699, retro_hsap_700, retro_hsap_701, retro_hsap_904,
Gorilla gorilla ENSGGOG00000025982 ortholog_one2one 3 retrogenes
retro_ggor_573, retro_ggor_596, retro_ggor_731,
Loxodonta africana ENSLAFG00000002083 ortholog_one2many 1 retrogene
retro_lafr_1016,
Myotis lucifugus ENSMLUG00000010791 ortholog_many2many 4 retrogenes
retro_mluc_1048, retro_mluc_2082, retro_mluc_235, retro_mluc_391,
Macaca mulatta ENSMMUG00000017209 ortholog_one2many 3 retrogenes
retro_mmul_1109, retro_mmul_334, retro_mmul_336,
Monodelphis domestica ENSMODG00000003561 ortholog_one2many 3 retrogenes
retro_mdom_1237, retro_mdom_1677, retro_mdom_941,
Nomascus leucogenys ENSNLEG00000009973 ortholog_one2one 4 retrogenes
retro_nleu_2506, retro_nleu_2507, retro_nleu_2948, retro_nleu_379,
Oryctolagus cuniculus ENSOCUG00000009771 ortholog_many2many 1 retrogene
retro_ocun_142,
Ochotona princeps ENSOPRG00000009586 ortholog_one2many 3 retrogenes
retro_opri_1141, retro_opri_193, retro_opri_718,
Pan troglodytes ENSPTRG00000023558 ortholog_one2one 3 retrogenes
retro_ptro_443, retro_ptro_479, retro_ptro_624,
Rattus norvegicus ENSRNOG00000005982 ortholog_one2many 1 retrogene
retro_rnor_2402,
Sorex araneus ENSSARG00000003913 ortholog_one2many 1 retrogene
retro_sara_566,
Sarcophilus harrisii ENSSHAG00000008352 ortholog_one2many 1 retrogene
retro_shar_603,
Sus scrofa ENSSSCG00000008354 ortholog_one2many 2 retrogenes
retro_sscr_660, retro_sscr_812,
Tupaia belangeri ENSTBEG00000009797 ortholog_one2many 4 retrogenes
retro_tbel_1112, retro_tbel_2362, retro_tbel_864, retro_tbel_898,
Tursiops truncatus ENSTTRG00000013982 ortholog_one2many 2 retrogenes
retro_ttru_1192, retro_ttru_423,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_202 92.20 77.47
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Download FASTA sequences of all ENSPPYG00000012354 retrocopies